Pairwise Alignments

Query, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 790 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N2E2

 Score =  332 bits (852), Expect = 3e-95
 Identities = 174/422 (41%), Positives = 262/422 (62%), Gaps = 5/422 (1%)

Query: 241 LAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYLDLDRFKTINDSLGHTIGDQLI 300
           LAY+D LT L NRSL  + LS +I  A   H    + +LDLDRFK +ND+LGH  GDQL+
Sbjct: 356 LAYHDGLTALPNRSLFSKLLSQSIGEASRYHRQLAVLFLDLDRFKQVNDTLGHDAGDQLL 415

Query: 301 KAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPAK-AEEVAKQLLTLISNPYAVDDHQF 359
           K VALR++A  +     AR+GGDEF +L+P LS  K     A+++L  I+ P+ +   +F
Sbjct: 416 KEVALRLKACLRTSDTVARLGGDEFVILLPELSDDKDVATAAQKVLGAIARPFNLQGQEF 475

Query: 360 YCTVSIGISVFPSVGSCNIDVLRQADTALYRAKASGRNKFMFYEPEMQAQVESFLEIEKG 419
             T S+GISVFP  G     + + AD A+Y+AK  G+N F FY  ++ A     + +E  
Sbjct: 476 RVTASVGISVFPQDGLDEQTLKKNADIAMYQAKQCGKNNFQFYSAKLNADSLERMTLELS 535

Query: 420 LHEALNQRQLELFYQPQVD-EQHNIIGVEALIRWNHPKRGLLPPGVFMPIAEETGQILPI 478
           L  AL + + +L YQ + D     I G+EAL+RWNHP  G++ P  F+P+AEETG I+PI
Sbjct: 536 LRHALERHEFQLHYQAKRDIGSGRITGMEALLRWNHPDLGIVAPMQFIPVAEETGLIVPI 595

Query: 479 GNWIIEQACYQYAQWKKQGILPPHFRRLAINISPLQFAQESFIEQVNHALRQAGITGEPI 538
           G W+++ AC Q   W++QG+       +A+N++  QFA E+ +  +   L + G+    +
Sbjct: 596 GKWVLKTACQQNVAWQQQGL---PCLGVAVNLTARQFADENLLTDLAGILAETGMDARLL 652

Query: 539 ELEITESLLLENVESAIEKMAKLKESQISISIDDFGTGYSSLRYLKHLAVDVLKIDRSFV 598
           ELEI ESLL+++V+ A+  +  LK  ++ I+IDDFG GYSSL  L+   +DV+KIDRS +
Sbjct: 653 ELEIAESLLMQDVKKALNVLTGLKHLKVRIAIDDFGIGYSSLSALEQFPLDVIKIDRSCI 712

Query: 599 NQLHLDDNDQAIVDTILAIARKLNLEVIAEGVEDTSELAALKKLGCNQFQGYLFDKPLRA 658
                   D+A+ + I+A+ R L+L V+A+GVE   +   L+   C++FQG+ F+KP+ A
Sbjct: 713 CDTSSVSEDKALTEAIIAMGRTLSLTVVAQGVETKEQADFLRDNACDEFQGFYFNKPVPA 772

Query: 659 EE 660
           ++
Sbjct: 773 DQ 774