Pairwise Alignments

Query, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1001 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N1B4

 Score =  350 bits (898), Expect = e-100
 Identities = 193/467 (41%), Positives = 286/467 (61%), Gaps = 12/467 (2%)

Query: 200 NDTQRSPLPLRLTHDDELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQK 259
           + T RSP     + +  L  +A+    +   ++L E ++  +  +D+LTGL NR+LL  +
Sbjct: 507 SSTVRSPS----STETRLINMATPLAGIAIERQLTEKRIRYMGDHDALTGLPNRTLLEDR 562

Query: 260 LSDAIETAQNSHSTGVLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSAR 319
           L  AI  AQ       + +LDLD+FK +NDSLGH+ GD+L+K VA RM    +      R
Sbjct: 563 LKQAILYAQRYSRLVTVVFLDLDKFKLVNDSLGHSAGDELLKTVAQRMLECVRRTDTVVR 622

Query: 320 IGGDEFAVLIPYLSPAKAEEVAKQLLTL---ISNPYAVDDHQFYCTVSIGISVFPSVGSC 376
           +GGDEF +++ +  P+  + V   L  +   I  P  +  H  + T S+G++ +P+ GS 
Sbjct: 623 LGGDEFVIIL-FDQPSDLDGVTPALHKIQEAILRPIQLSGHTLHVTCSMGLATYPADGSD 681

Query: 377 NIDVLRQADTALYRAKASGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQRQLELFYQPQ 436
              +L  AD A+YRAK  GRN + FY  EM  +V+  L ++ GL  ALN  +  L YQPQ
Sbjct: 682 TDTLLSNADAAMYRAKELGRNSYQFYTSEMNNKVQGKLAMQDGLRNALNHDEFLLLYQPQ 741

Query: 437 VDEQHN-IIGVEALIRWNHPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYAQWKK 495
           VD Q   IIGVEALIRW HP+ G++ P  F+P AEETG I+PIG+W+I  AC Q   W+ 
Sbjct: 742 VDLQSGQIIGVEALIRWQHPELGMVSPVKFIPQAEETGLIVPIGDWVIHTACRQNKAWQD 801

Query: 496 QGILPPHFRRLAINISPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAI 555
            G  P     +++NIS  QF +   I++V HAL++ G+    +ELE+TESL++++++ AI
Sbjct: 802 AGWPPI---TMSVNISARQFIERDLIDRVMHALQETGLDPMYLELELTESLIMQDLQQAI 858

Query: 556 EKMAKLKESQISISIDDFGTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTIL 615
            KM +L+   IS+SIDDFGTGYSSL  LK   +  LKID+SFV  L  ++ND+AI   ++
Sbjct: 859 SKMKELQSMGISLSIDDFGTGYSSLAALKSFPIARLKIDQSFVRDLPDNENDKAIATAVI 918

Query: 616 AIARKLNLEVIAEGVEDTSELAALKKLGCNQFQGYLFDKPLRAEEIA 662
           ++  KLNL+VIAEGVE   +   L++ GC++ QG+ F   +  +EI+
Sbjct: 919 SLGHKLNLKVIAEGVETEEQQTFLRENGCDEIQGHFFSSAVSCDEIS 965