Pairwise Alignments

Query, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 680 a.a., GGDEF domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  364 bits (934), Expect = e-105
 Identities = 229/691 (33%), Positives = 368/691 (53%), Gaps = 36/691 (5%)

Query: 6   KIHSLAFKQAKSVFLVSVLLGLCFSFYHTLSDLHQEQSKVQEHYNFKLVQSYEN-ASQAA 64
           +  SL +KQ   V   ++   +   F   L+ +     +       +L+ S E  A+ A 
Sbjct: 4   RFKSLTWKQTNLVVFTALFFAVAI-FIIELALMVMSTREALTSSQQELLDSVEQPAANAV 62

Query: 65  YHLNNLLAEQVATTLMLDPGIFKVEIVD------DFGDVMTRKEKAISEQSQLVSVLASY 118
           + L++ LA Q         G+ KVE V       D G +        +  S   + L+  
Sbjct: 63  WALDDNLARQTLE------GVLKVEHVGASVIELDDGSMFVSVTNGKNTYSNFFNSLSEE 116

Query: 119 LTPAVSVFSAELHQP------NSNVVVGKLSFYIDGSSIAKVFIAKTTRVLLFDLLRNTL 172
           L   +   S  L++P          ++G L+ + D   +A     +     L  L R   
Sbjct: 117 LFGDLREISRPLYRPFYFEGSRQQQLIGSLTIFYDTQELANTLFGQLKVGFLATLARALF 176

Query: 173 LTTILLLFFYQKLSRPITMLITWVNSLN--DTQRSPLPLRLTH-DDELSELASTFQSMWK 229
           LT +L + F++ L++PI  +   ++ +       + LP+   H DDEL  +++    +  
Sbjct: 177 LTLVLSIVFHRFLTQPIARISEAIDKIEPESPDENLLPISDAHKDDELGLVSTKLNQILL 236

Query: 230 GKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYLDLDRFKTIND 289
                +SKL ++A  D LTGL NR+LLL+ ++  I+ A+    +  L ++DLDRFK +ND
Sbjct: 237 QFGQTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRARVHKRSFTLLFIDLDRFKNVND 296

Query: 290 SLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPAK-AEEVAKQLLTLI 348
           SLGH +GDQ +  +A  +E    +    AR+GGDEF +L   +  A  A +   +LL  +
Sbjct: 297 SLGHALGDQFLARIARLLERVVGDKGTVARLGGDEFVILADEIHCADMAADFVDKLLVQL 356

Query: 349 SNPYAVDDHQFYCTVSIGISVFPSVGSCNIDVLRQADTALYRAKASGRNKFMFYEPEMQA 408
           +NP  + DH  +   S+GIS++P  G+   D++R AD A+Y AKASG N++ F++ +M  
Sbjct: 357 NNPIQLGDHSIHPAASVGISLYPEDGNSAEDLIRHADIAMYSAKASGSNQWAFFKQQMTE 416

Query: 409 QVESFLEIEKGLHEALNQRQLELFYQPQVD-EQHNIIGVEALIRWNHPKRGLLPPGVFMP 467
           +    L  E  LH+AL   +  L +QP++D     ++G EALIRW    R L+ P  F+P
Sbjct: 417 RAAVRLRTEASLHDALKNDEFVLHFQPKLDLTTGKVMGCEALIRWQKDGR-LISPMSFIP 475

Query: 468 IAEETGQILPIGNWIIEQACYQYAQWKKQG--ILPPHFRRLAINISPLQFAQESFIEQVN 525
           +AEETG I+PIG W++EQ+C     W+KQ    +P     +A+N++  QFA  S +  + 
Sbjct: 476 VAEETGIIVPIGRWVLEQSCKTLRHWQKQYNFAIP-----IAVNVASQQFADASLVPDIK 530

Query: 526 HALRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISIDDFGTGYSSLRYLKH 585
               +  I+ + +E+EITE+ L+ +VE+AI K+ +LK +   I++DDFGTGYSSL YL+H
Sbjct: 531 QMALRYQISPDLLEIEITETSLMSDVETAISKLEQLKNAGFGIAVDDFGTGYSSLSYLRH 590

Query: 586 LAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGVEDTSELAALKKLGCN 645
           L +  +KIDR FV  L    ND AI  TIL + ++L+L ++AEG+E+  +L  LK  GC 
Sbjct: 591 LPITTMKIDRCFVTDL---PNDSAIASTILMLGKQLDLRIVAEGIENEQQLQWLKTAGCG 647

Query: 646 QFQGYLFDKPLRAEEIAQRFVSNSYRKIQTL 676
             QG+ F  PL  EE  ++++ +   +IQ L
Sbjct: 648 IGQGFYFSPPLPMEEFEEKYIRSQTAEIQNL 678