Pairwise Alignments

Query, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1484 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  328 bits (842), Expect = 9e-94
 Identities = 173/462 (37%), Positives = 277/462 (59%), Gaps = 15/462 (3%)

Query: 207  LPLRLTHDDE--LSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAI 264
            L L    DD   +S   + F  + + K+  E+ L +LA YD LTGL NRSL   +L+  I
Sbjct: 1020 LNLSTMKDDRGNISHYVAVFSDITERKQ-TEADLRRLANYDVLTGLPNRSLFAARLAKCI 1078

Query: 265  ETAQNSHSTGVLFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDE 324
              A+ +     L +LDLDRFK +NDS GH++GD L+   A R+++    ++   R GGDE
Sbjct: 1079 HRAEQTEDKLALIFLDLDRFKNVNDSYGHSMGDALLVEAASRLQSCVSENHTLCRFGGDE 1138

Query: 325  FAVLI-PYLSPAKAEEVAKQLLTLISNPYAVDDHQFYCTVSIGISVFPSVGSCNIDVLRQ 383
            F +L+   +   +   + + L+  I  P+ +   +F+ + SIG+S++P        +++ 
Sbjct: 1139 FVILMRDMVDIDEVNHLCEALIRQIEKPFELYGREFFISTSIGVSLWPDDAKQPEVLIKN 1198

Query: 384  ADTALYRAKASGRNKFMFYEPEMQAQVESFLEIEKGLHEALNQRQLELFYQPQVD--EQH 441
            AD A+Y AK  GR  F ++  E  A+    L++E  L +A+++++ EL++QPQ+D  +  
Sbjct: 1199 ADQAMYHAKEEGRGNFQYFSAERNAEALYHLKLEAELRKAMDRQEFELYFQPQIDILKDD 1258

Query: 442  NIIGVEALIRWNHPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYAQWKKQGILPP 501
             ++G+EAL+RW+HPK G + P +F+ +AE  G I+ I  W+I+QAC Q A+W +      
Sbjct: 1259 KVVGMEALLRWHHPKEGYIRPDIFIRVAESCGLIIEIDRWVIKQACLQGAKWAE------ 1312

Query: 502  HFR---RLAINISPLQFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAIEKM 558
            HF    +L++N+S + F Q  FI+ V  AL+++G+  + + LEITE +L++ +  A + +
Sbjct: 1313 HFGDELKLSVNVSAVHFRQPDFIQDVQQALKESGMPAKMLGLEITEGVLMKELHVAKDHL 1372

Query: 559  AKLKESQISISIDDFGTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIA 618
              L+E  I ++IDDFGTGYSSL YL+   V  LKIDRSF+  +  ++ DQAI  +I+ +A
Sbjct: 1373 KALREIGIEVAIDDFGTGYSSLAYLRSFDVSTLKIDRSFLIDIATNEADQAIASSIIELA 1432

Query: 619  RKLNLEVIAEGVEDTSELAALKKLGCNQFQGYLFDKPLRAEE 660
            R L L+V+AEGVE   +L  +   GC   QGY F KP+  +E
Sbjct: 1433 RNLKLKVVAEGVETQEQLEQVFSRGCYIIQGYYFAKPMTIDE 1474