Pairwise Alignments

Query, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1010 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  330 bits (845), Expect = 3e-94
 Identities = 186/447 (41%), Positives = 274/447 (61%), Gaps = 12/447 (2%)

Query: 231  KELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYLDLDRFKTINDS 290
            K+ AE  + + A YD LTGL NR +LL+ L+  I     +HS   L +LDLD FK +ND+
Sbjct: 570  KKEAEHIIWKQANYDPLTGLPNRRMLLEYLNTEILRIDRNHSHFALMFLDLDFFKEVNDT 629

Query: 291  LGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYL-SPAKAEEVAKQLLTLIS 349
            LGH +GD L++  A R++   +   + AR+GGDEF V++  + SP+  E VA+ +L  I+
Sbjct: 630  LGHDMGDLLLQETAKRLKGCIRESDVVARLGGDEFTVVLSGIDSPSGVERVAQSILERIA 689

Query: 350  NPYAVDDHQFYCTVSIGISVFPSVGSCNIDVLRQADTALYRAKASGRNKFMFYEPEMQAQ 409
             PY++ D   Y + SIGI+++P   +    +L+ AD A+Y AK  GRN+F ++ P MQ  
Sbjct: 690  EPYSLGDETAYISASIGITIYPDDATSIEGLLKHADQAMYAAKEQGRNRFHYFTPSMQEY 749

Query: 410  VESFLEIEKGLHEALNQRQLELFYQPQVDEQHNIIGV---EALIRWNHPKRGLLPPGVFM 466
                + + K L  A+N+++ ELFYQP VD   N +GV   EALIRW HP+RGL+ PG F+
Sbjct: 750  ARYRMALIKDLRNAINRKEFELFYQPIVDM--NKLGVYKAEALIRWVHPQRGLVSPGEFI 807

Query: 467  PIAEETGQILPIGNWIIEQACYQYAQWKKQGILPPHFRRLAINISPLQFAQE--SFIEQV 524
            P+AEETG I  IGNW+ E+A  Q A+W+ Q  +     +++IN SP+QF  E  +F + +
Sbjct: 808  PVAEETGLINEIGNWVFEKAAQQSARWRTQHGVEI---QISINKSPIQFRDEGDTFSDWL 864

Query: 525  NHALRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISIDDFGTGYSSLRYLK 584
               LR   ++   I +EITE LLL+      +K+   +++ I +S+DDFGTGYSSL YLK
Sbjct: 865  A-LLRHLELSSNAICVEITEGLLLDASMGVTDKLLAYRDAGIQVSLDDFGTGYSSLAYLK 923

Query: 585  HLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGVEDTSELAALKKLGC 644
               +D LKID+SF   L  D +  A+ + I+ +A KL ++VIAEGVE   +   L   GC
Sbjct: 924  KFDIDYLKIDQSFTRNLESDSDGVALCEAIIVMAHKLGIKVIAEGVETQFQHDILASAGC 983

Query: 645  NQFQGYLFDKPLRAEEIAQRFVSNSYR 671
            +  QGYL+ KP+   E  + +V+   R
Sbjct: 984  DFAQGYLYSKPVSLPEFERLYVNPEAR 1010