Pairwise Alignments

Query, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 998 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  329 bits (844), Expect = 3e-94
 Identities = 186/497 (37%), Positives = 291/497 (58%), Gaps = 15/497 (3%)

Query: 181 FYQKLSRPITMLITWVNSLNDTQRSP------LPLRLTHD-DELSELASTFQSMWKGKEL 233
           FYQ+++  I     W   +   +R+       L +    D D L        S    K+ 
Sbjct: 504 FYQQMNDDIRNKGEWQGEMRQRRRNNEEYVIWLTINTIKDKDGLPHRRVALFSDITDKKQ 563

Query: 234 AESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYLDLDRFKTINDSLGH 293
           +E  + + A YD+LTGL NR +LL+ LS  I+TA  + +   L +LDLD FK +ND+LGH
Sbjct: 564 SEHLIWKQANYDTLTGLPNRRMLLEYLSAEIKTADRNRNHFALMFLDLDYFKEVNDTLGH 623

Query: 294 TIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPAKA-EEVAKQLLTLISNPY 352
            +GD L+   A R+++  ++  + AR+GGDEF V++  ++  K  E VA+ +L  I+ PY
Sbjct: 624 AMGDLLLIETASRLKSCVRDADVVARLGGDEFTVVLSSMADHKGIERVAEHILRRIAEPY 683

Query: 353 AVDDHQFYCTVSIGISVFPSVGSCNIDVLRQADTALYRAKASGRNKFMFYEPEMQAQVES 412
            + +   + + SIGI+++P        +L+ AD A+Y AK  GRN+F ++ P MQ   + 
Sbjct: 684 YLGEETTHISASIGITLYPDDSPSIEGLLKHADQAMYAAKDQGRNRFNYFTPSMQEYAKY 743

Query: 413 FLEIEKGLHEALNQRQLELFYQPQVD-EQHNIIGVEALIRWNHPKRGLLPPGVFMPIAEE 471
            + +   L +A+  ++ EL YQP V      ++  EAL+RW HP+RG + P  F+P+AE+
Sbjct: 744 RMRLIHDLRQAVLNKEFELHYQPIVTMATGEVLKAEALLRWFHPERGSVSPAEFIPVAED 803

Query: 472 TGQILPIGNWIIEQACYQYAQWKKQ-GILPPHFRRLAINISPLQFAQE-SFIEQVNHALR 529
           TG I+ IGNW+ EQA  Q AQW+K  G+      ++++N SP+QF  E + +      L+
Sbjct: 804 TGLIVEIGNWVFEQAARQSAQWRKTLGVEI----QISVNKSPIQFRDEGALLHNWLELLQ 859

Query: 530 QAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISIDDFGTGYSSLRYLKHLAVD 589
           Q  +TG  + +EITE LLL+      EK+   +++ + +S+DDFGTGYSSL YLK   +D
Sbjct: 860 QLDVTGAGVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFDID 919

Query: 590 VLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGVEDTSELAALKKLGCNQFQG 649
            LKID+SF   +  D+ND  + + I+ +A KL ++VIAEGVE  ++   L + GC+  QG
Sbjct: 920 YLKIDQSFTRNIDTDENDHTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLRAGCDYGQG 979

Query: 650 YLFDKPLRAEEIAQRFV 666
           YLF KP+ A E A +++
Sbjct: 980 YLFSKPVSASEFASKYL 996