Pairwise Alignments

Query, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 684 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  355 bits (912), Expect = e-102
 Identities = 226/687 (32%), Positives = 364/687 (52%), Gaps = 28/687 (4%)

Query: 6   KIHSLAFKQAKSVFLVSVLLGLCFSFYH---TLSDLHQEQSKVQEHYNFKLVQSYEN-AS 61
           +  SL +KQ   V   ++   +          +    Q+ +  Q+    +L+ S E  A+
Sbjct: 4   RFKSLTWKQTNLVVFTALFFAIAIFIVEIALVVVSTKQQLTTTQQ----ELLDSVEQPAA 59

Query: 62  QAAYHLNNLLAEQVATTLMLDPGIFKVEIVDDFGDVMTRKEKAISEQSQLVSVLASYLTP 121
            A + L++ LA Q     +    +    I  D G +        +  SQ    L++ L  
Sbjct: 60  NAVWALDDNLARQTLEGAIKVEHVGSAVIELDDGSMFVSVSNNRANNSQTFISLSNQLFD 119

Query: 122 AVSVFSAELHQP------NSNVVVGKLSFYIDGSSIAKVFIAKTTRVLLFDLLRNTLLTT 175
            +   S  L++P          ++G L+ + D   +     ++        L R  LLT 
Sbjct: 120 DLKEISRPLYRPFYFEGTQKQQLIGTLTIFYDTQELTNTLFSQLRFSFFATLARALLLTL 179

Query: 176 ILLLFFYQKLSRPITMLITWVNSL--NDTQRSPLPLRLTH-DDELSELASTFQSMWKGKE 232
           +L + F++ L++PI  +   ++ +  +    + LP+   H DDEL  + S F  +     
Sbjct: 180 VLTVVFHRFLTQPIARISEAIDKIEPDSPDENLLPMSNAHKDDELGLVTSKFNQILIQFS 239

Query: 233 LAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGVLFYLDLDRFKTINDSLG 292
             +SKL ++A  D LTGL NR+LLL+ ++  I+ ++    +  L ++DLDRFK INDSLG
Sbjct: 240 QTQSKLRKMATRDPLTGLPNRTLLLETIAVTIQRSRVHKRSFALMFIDLDRFKNINDSLG 299

Query: 293 HTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYL-SPAKAEEVAKQLLTLISNP 351
           H +GDQ +  +A  +E    +    +R+GGDEF +L   + SP +A +   +LL  ++ P
Sbjct: 300 HALGDQFLARIARILERVVGDKGSVSRLGGDEFVILADSVHSPDQAADFVDKLLVQLNVP 359

Query: 352 YAVDDHQFYCTVSIGISVFPSVGSCNIDVLRQADTALYRAKASGRNKFMFYEPEMQAQVE 411
             +++H  +   SIGIS++P  GS   D++R AD A+Y AKA+G N++ F++ +M  +  
Sbjct: 360 IQLNEHAIHPAASIGISIYPEDGSSAEDLIRHADIAMYSAKAAGSNQWAFFKQQMTERAA 419

Query: 412 SFLEIEKGLHEALNQRQLELFYQPQVDEQHN-IIGVEALIRWNHPKRGLLPPGVFMPIAE 470
             L  E  LH+AL   +  L++QP++D Q   I G EALIRW    R L+ P  F+P+AE
Sbjct: 420 VRLRTEASLHDALKNNEFLLYFQPKLDLQTGKITGCEALIRWQKDGR-LISPMSFIPVAE 478

Query: 471 ETGQILPIGNWIIEQACYQYAQW-KKQGILPPHFRRLAINISPLQFAQESFIEQVNHALR 529
           ETG I+PIG W+IEQ+C    +W KK     P    +AIN++  QFA  S +  +     
Sbjct: 479 ETGIIIPIGRWVIEQSCRVLREWQKKYNYAIP----IAINVASQQFADASLVSDIKQMAL 534

Query: 530 QAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISIDDFGTGYSSLRYLKHLAVD 589
           +  I  E +E+EITE+ L+ ++E AI K+ +LK +   I++DDFGTGYSSL YL+HL + 
Sbjct: 535 RYQIQPELLEIEITETSLMNDIELAINKLEQLKSAGFGIAVDDFGTGYSSLSYLRHLPIT 594

Query: 590 VLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGVEDTSELAALKKLGCNQFQG 649
            +KIDR FV+ L     D AI  TIL + ++LNL ++AEG+E+  +L  LK   C   QG
Sbjct: 595 TMKIDRCFVSDL---PGDSAIASTILMLGKQLNLTIVAEGIENELQLDWLKSNECQIGQG 651

Query: 650 YLFDKPLRAEEIAQRFVSNSYRKIQTL 676
           + F +PL   +    ++++    I  L
Sbjct: 652 FYFSQPLPQADFEALYMASQTATISNL 678