Pairwise Alignments

Query, 685 a.a., GGDEF-domain containing protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  340 bits (872), Expect = 3e-97
 Identities = 181/447 (40%), Positives = 278/447 (62%), Gaps = 7/447 (1%)

Query: 216  ELSELASTFQSMWKGKELAESKLNQLAYYDSLTGLANRSLLLQKLSDAIETAQNSHSTGV 275
            E S   + F  + + K+ AE  L  LA +D+LTGL NR+L   +L+ AI  A  S++   
Sbjct: 1057 ETSHFVAVFTDITERKK-AEEDLRFLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVA 1115

Query: 276  LFYLDLDRFKTINDSLGHTIGDQLIKAVALRMEAWTKNDYLSARIGGDEFAVLIPYLSPA 335
            L +LDLDRFK INDS+GH IGD L+KAVA R+++  +     AR+GGDEF +++  ++  
Sbjct: 1116 LLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKT 1175

Query: 336  KAEE-VAKQLLTLISNPYAVDDHQFYCTVSIGISVFPSVGSCNIDVLRQADTALYRAKAS 394
            KA   +++++L     P+ +DD     + SIGIS++P+       +++ ADTA+Y AKA 
Sbjct: 1176 KAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKAL 1235

Query: 395  GRNKFMFYEPEMQAQVESFLEIEKGLHEALNQRQLELFYQPQVDEQH-NIIGVEALIRWN 453
            GRN F FY  ++       +++E GL +A++  +L L YQP+   ++ ++ G+EAL+RW 
Sbjct: 1236 GRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQ 1295

Query: 454  HPKRGLLPPGVFMPIAEETGQILPIGNWIIEQACYQYAQWKKQGILPPHFRRLAINISPL 513
            H + G + P  F+P+AEETG I  IG+W+I Q+C Q A+W + G        +A+N+S  
Sbjct: 1296 HSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNELGFSDIS---MAVNLSAR 1352

Query: 514  QFAQESFIEQVNHALRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISIDDF 573
            Q   +  I  +  AL  +G+  + +ELE+TES+++ N + ++  ++KLK   ++I++DDF
Sbjct: 1353 QLKAD-IISTIEVALAVSGLPAKALELELTESMIMGNPQESVNILSKLKALGLTIAVDDF 1411

Query: 574  GTGYSSLRYLKHLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGVEDT 633
            GTGYSSL YLK   +D LKIDR FV  +  D +D AI   I+A+A  L L V+AEGVE  
Sbjct: 1412 GTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALAHSLELNVVAEGVETQ 1471

Query: 634  SELAALKKLGCNQFQGYLFDKPLRAEE 660
             +L  L   GC+Q QG+L  KPL A++
Sbjct: 1472 EQLNFLALQGCDQVQGFLLSKPLSAQD 1498