Pairwise Alignments

Query, 684 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1247 a.a., sensory box/GGDEF domain/EAL domain protein from Pseudomonas fluorescens FW300-N2E2

 Score =  311 bits (796), Expect = 2e-88
 Identities = 166/418 (39%), Positives = 248/418 (59%), Gaps = 4/418 (0%)

Query: 246  KQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCI----QNETPLVMLYLDIDNFKNINDSL 301
            K   A     AH D LTGL NR  F  RL   +    +N +   +L+LD+D FK+INDSL
Sbjct: 797  KHAQARLDYQAHHDPLTGLPNRTLFESRLLAALNGQQENGSQGAVLFLDLDRFKHINDSL 856

Query: 302  GHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLINQ 361
            GH +GD ++K +A RL+  L     +  LGGDEF ++LP  +    AE +A ++++    
Sbjct: 857  GHPVGDLLLKGIAVRLREQLRDIDTVARLGGDEFIILLPGLQQPSDAEHIAQKLLNCFAA 916

Query: 362  PFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEA 421
            PF        ++ SIG+  YP DG D   L++NAD AMY +K +GRNR+  +   +  +A
Sbjct: 917  PFQAGEHEFFISASIGTSLYPQDGCDVATLVKNADAAMYRSKAKGRNRVESYTRDLTAQA 976

Query: 422  RMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGAFIPVA 481
              R+ LE EL++A+++N L + +QPK++  D  + GAEAL+RW HP  G + P  FIP+A
Sbjct: 977  SERVALEHELRRAIERNELSLSFQPKISLVDNQLVGAEALIRWTHPTFGDVPPEHFIPLA 1036

Query: 482  EKAGLIEHLGRVVMREVFATVKRWKLQGILPGRVAINISPEQFGNPQLIDYLEKLLRTTG 541
            E+ G+I  +G  V+      +  W       G +++N++  Q   P L+  +E+LLR   
Sbjct: 1037 EENGMILQIGDWVLERACRQLCEWNDAYDSLGPLSVNLAGAQLRQPNLLGRIEQLLREHQ 1096

Query: 542  LDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGTGYSSLAYLARFPIDELK 601
            L+P  +  E+TE+ +MS +E    +L+ +KKLG  L+IDDFGTGYSSL+YL R P+D LK
Sbjct: 1097 LEPGLLQLEITENFIMSQAEEALTVLHQLKKLGVQLAIDDFGTGYSSLSYLKRLPLDILK 1156

Query: 602  IDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQATLLSNLNCHSIQGF 659
            ID++F+  +   P    ++  II LGRS+  T++AEGVET  Q   L+   C  IQG+
Sbjct: 1157 IDQSFVRGLPDDPHDAAIVRAIIALGRSMQFTIIAEGVETLAQQQFLTEEGCEQIQGY 1214



 Score = 34.7 bits (78), Expect = 3e-05
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 16/145 (11%)

Query: 36  VNERYCDIAGLSSEEMVGMSDSQV-------LGEHFYRHLKPFYERAFNNEHIESELTLS 88
           VN+ + +  GLS+ E+VG S +++       +G    + L+     A +  ++E     S
Sbjct: 463 VNKAFEEQIGLSAAEVVGHSATELNIWGIQGVGPGLLQRLQ-----AGSIRNLEMPFRRS 517

Query: 89  EIDLETSLHFSLSPIMINDRVQYLVFHAIDTSEKQILVRSLEESESKYALLTTLLPDGLM 148
              + T L  S  P  + D    LV    D S+ +   + L+ SE K+A      PDGL+
Sbjct: 518 NGQVFTGL-ISAEPFDL-DTTPALVVVVRDISQLKETQQQLQTSEEKFAKAFHASPDGLL 575

Query: 149 M--VENDCIISANPSAARLLGFDDA 171
           +    +  +I  N   +R+ GF+ A
Sbjct: 576 LSRQSDGLLIEVNEGFSRITGFNSA 600



 Score = 26.9 bits (58), Expect = 0.006
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 117 IDTSEKQILVRSLEESESKYALLTTLLPDGLMMVE--NDCIISANPSAARLLGFDDAQKL 174
           ID SE +    +L  SE K+A +    PD L++    + C++  N +    +G   A ++
Sbjct: 420 IDISEAKRTEEALRLSEQKFASVFRQCPDILVIARLLDGCLLEVNKAFEEQIGL-SAAEV 478

Query: 175 LGENLSRLFI 184
           +G + + L I
Sbjct: 479 VGHSATELNI 488