Pairwise Alignments

Query, 684 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 797 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  320 bits (819), Expect = 2e-91
 Identities = 207/549 (37%), Positives = 300/549 (54%), Gaps = 19/549 (3%)

Query: 121 EKQILVRSLEESESKYALLTTLLPDGLMMVENDC-IISANPSAARLLGFDDAQKLLGENL 179
           E+Q+ V    ESE  +  L    P G+++V++D  ++ ANP+AA L G    +  L  NL
Sbjct: 244 ERQLAV---SESERLFRELVDTAPIGMLVVDSDLRVLQANPAAAALFGCSPDE--LSNNL 298

Query: 180 --SRLFIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAGCTSLLGNQSQLIL 237
              RL   + T  + S+   + L       LTG R G E  +++        G +  L+L
Sbjct: 299 PGDRLVEGDATARLRSTPANTTLE------LTGRRNGQEVPLEISCTPFQRYGEKHFLVL 352

Query: 238 LQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNI 297
           L+D  +  +      +  AH D LT L NR+   +RLEQ +    PL +LYLD+D+FK I
Sbjct: 353 LRDISDRLRA-EQRLRFLAHFDPLTQLANRNYLMQRLEQLLSARLPLSLLYLDLDHFKRI 411

Query: 298 NDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIIS 357
           NDSLGH +GDK++ ++  RL +L+P+ A+L   GGDEF L+L   +   SAE LA RII 
Sbjct: 412 NDSLGHEVGDKLLVQIGDRLGQLMPEHALLSRTGGDEFMLLLDGCDI-ASAEQLARRIID 470

Query: 358 LINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQM 417
               P  +  +   ++ SIG     G  + A  LL+  D A+Y AK+ GRN  + +N+ +
Sbjct: 471 GFQPPVRIGQYECFVSPSIGITVSDGR-HSASDLLKQVDLALYAAKDAGRNCTVVYNEAL 529

Query: 418 NKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGAF 477
           ++ A  R  LE  L++AL ++   + YQ +VNA+       EAL+RW  P  G + PG F
Sbjct: 530 SEAAAGRRALEQALRRALDRDEFVLHYQAQVNAQG-EPEVMEALLRWNSPERGLVPPGEF 588

Query: 478 IPVAEKAGLIEHLGRVVMREVFATVKRWKLQGILPGRVAINISPEQFGNPQLIDYLEKLL 537
           IPV E +G+I    R V RE      RW  QG    R+A+N+SP  F    L   L  +L
Sbjct: 589 IPVLEDSGMIIEATRWVFREACRQACRWHAQGYSL-RIAVNLSPLDFRQADLAGSLLAIL 647

Query: 538 RTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGTGYSSLAYLARFPI 597
              G   + +  E+TESA++   EH QQ L  +K  G  L +DDFGTGY+SL YL RF  
Sbjct: 648 EEEGASTSMLELEITESALLEADEHVQQTLTRLKAAGLPLLLDDFGTGYASLTYLQRFRF 707

Query: 598 DELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQATLLSNLNCHSIQ 657
           D +KIDR F+S +    + + ++  I+ +   L L VVAEGVE ++QA  L    C S+Q
Sbjct: 708 DGIKIDREFVSGLPDSEESVALVRGILTMASHLGLHVVAEGVENERQAAFLRLNGCPSLQ 767

Query: 658 GFHFYRPQP 666
           GF++ RPQP
Sbjct: 768 GFYYARPQP 776