Pairwise Alignments

Query, 684 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  298 bits (764), Expect = 4e-85
 Identities = 194/565 (34%), Positives = 308/565 (54%), Gaps = 20/565 (3%)

Query: 121 EKQILVRSLEESESKYALLTTLLPDGLMMVE-NDCIISANPSAARLLGFDDAQKLLGENL 179
           E+Q      E S  + A +     +G+++ +    I+  NP+ +R+ G+   +++LG+  
Sbjct: 67  EQQRAQHVQETSLKQAAAVFDSTQEGVLVTDPRQRIVHVNPAFSRITGYS-TEEVLGQT- 124

Query: 180 SRLFIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAGCTSLL---GNQSQL- 235
            +LF   K    F  Q+   L +K     +G      +  +++    +L     NQ QL 
Sbjct: 125 PKLFASGKHDAEFYQQMWLALKDKGE--WSGEIWNRRKNGEVYPQWQNLRCIHDNQGQLS 182

Query: 236 ---ILLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCIQ----NETPLVMLY 288
               +  D     +      Q+ AH D L  L NR  FT+R +Q ++    ++    +L 
Sbjct: 183 HYVAVFSDLSALKRSREELDQL-AHYDPLVNLPNRLLFTERAKQDLERARAHKRSGALLL 241

Query: 289 LDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSA 348
           +D+D+FK+IN+SLGH +GD +++ V+ RL   L +   LG LGGDEF L+  E      A
Sbjct: 242 IDLDHFKDINESLGHSLGDALLQAVSTRLSEHLEKGMTLGRLGGDEFALLC-EGYGAEKA 300

Query: 349 EMLADRIISLINQPFDLHHFSKRLACSIGSVRYP--GDGNDARVLLQNADTAMYEAKERG 406
             LA RI+  +N+ F +       + SIG V YP   D  +A  L++NAD+A+++AK  G
Sbjct: 301 TALALRILDRLNESFHIGDQELFSSASIGIVLYPYPTDVQNAEQLMRNADSALFKAKSSG 360

Query: 407 RNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWKH 466
           R+    +++++  +AR R+ L   L++AL+Q  L + YQP  + R  +I+G EALVRW+H
Sbjct: 361 RSTYAFYSEELTSQARQRVELVTALRQALEQGQLRLHYQPIYDLRQGTISGFEALVRWQH 420

Query: 467 PVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRWKLQGILPGRVAINISPEQFGN 526
           P +G I+PG FIP+AE+ GLI  +   V+ +     + W  QG   G +A+NIS   FGN
Sbjct: 421 PEKGLIAPGVFIPIAEETGLISAIDHWVLEQACNQAREWLGQGHPLGFIAVNISSRLFGN 480

Query: 527 PQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGTGY 586
            +L   +  +L  +GL+  ++  E+TESAVM D +   ++L  ++ LG  L+IDDFGTGY
Sbjct: 481 GELDLQVATILARSGLEARHLELEITESAVMQDPDAALELLQRLRALGVQLAIDDFGTGY 540

Query: 587 SSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQAT 646
           SSL  L R  + +LKID+ F+  +        +  ++I L  +L L VVAEG+ET +QA 
Sbjct: 541 SSLQRLKRMNVHKLKIDQGFVRGLPDDRDDAAITRSVIGLAHNLGLKVVAEGIETAEQAA 600

Query: 647 LLSNLNCHSIQGFHFYRPQPKHEVE 671
            L   NC   QG+ F RPQP   ++
Sbjct: 601 FLLAQNCDYGQGYGFARPQPADAID 625