Pairwise Alignments

Query, 684 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 778 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  315 bits (807), Expect = 5e-90
 Identities = 196/578 (33%), Positives = 303/578 (52%), Gaps = 32/578 (5%)

Query: 118 DTSEKQILVRSLEESESKYALLTTLLPDGLMMVENDC-IISANPSAARLLGFDDAQKLLG 176
           D + ++ ++ +LE++E +Y  +     +G+     D   ++ANP+ AR+ G+D A +L+ 
Sbjct: 206 DITAQRAILDALEQAELRYRSIFENASEGIFQSTRDGRYLAANPALARIYGYDSATELVA 265

Query: 177 ENLS---RLFIDEKTKTVFSSQLASLLTEKPLVCLTGPRCGFERKIQLHAGCTSLLGNQS 233
           +      RL+++   +  F   +             G    FE ++    G    +   +
Sbjct: 266 DLADIERRLYVEGGRREAFCRLMEH----------QGEVLNFESEVYRRDGTRIWISENA 315

Query: 234 QLI------------LLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCIQNE 281
            ++             +QD  E  K +    +  A+ D LTGL NR     R+EQ +   
Sbjct: 316 HVVRGANGEFICYEGTVQDISER-KHYQQQLERQANHDLLTGLPNRILLNDRIEQGLARA 374

Query: 282 TPL----VMLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGL 337
             L     ++++D+DNFK IND LGH  GD+++K +AARL   L     +  +GGDEF L
Sbjct: 375 ARLGYYLTLVFIDLDNFKFINDGLGHVAGDELLKSIAARLAGSLRGSDTVARVGGDEFVL 434

Query: 338 ILPEPEHNRSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADT 397
           +L +     +   L +R+++ I +P  L     ++  SIG   +PGDG DA+ LL++AD 
Sbjct: 435 VLSDHYRISTVISLLERVLNEIRRPVTLAGREFQVGASIGVAMFPGDGEDAQTLLKHADI 494

Query: 398 AMYEAKERGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFSING 457
           AMY AK+RGRN    F   +N+ A  RL LE  ++ AL+++   V YQPKV+A    I G
Sbjct: 495 AMYAAKKRGRNNFQFFTHDLNRIADERLNLEAAMRAALERDEFSVHYQPKVDASR-RIVG 553

Query: 458 AEALVRWKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRWKLQGILPGRVAI 517
            EAL RW     G I P  FIPVAE++GLI  L   V+R  F+  ++W     +P  VA+
Sbjct: 554 VEALARWTDAQLGVIGPDRFIPVAEESGLIMPLTLAVLRRAFSDARQWNAGRAIPLMVAV 613

Query: 518 NISPEQFGNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTL 577
           N+SP  F    ++D +  +L   GL PN +  E+TE+  + D      +L   K  GF L
Sbjct: 614 NLSPLLFLGDDVVDRVCTVLDDVGLPPNQVELEITETVFLGDGTRAVAILAEFKARGFRL 673

Query: 578 SIDDFGTGYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAE 637
           ++DDFGTGYS+L+YL RFP+D +KIDR+ ++ ++   +   +    I+LG+SL+ TVVAE
Sbjct: 674 AMDDFGTGYSALSYLRRFPLDIIKIDRSLVTGLEQEEEVAMIARAAISLGKSLHKTVVAE 733

Query: 638 GVETQQQATLLSNLNCHSIQGFHFYRPQPKHEVEELFA 675
           GVE   Q   L    C   QG+   RP P  +   L A
Sbjct: 734 GVENAAQFDFLCRNGCDEFQGYLLSRPLPAAQFTALLA 771