Pairwise Alignments

Query, 684 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1431 a.a., sensory box protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  324 bits (830), Expect = 2e-92
 Identities = 169/419 (40%), Positives = 251/419 (59%)

Query: 259  DSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAARLK 318
            D LTGL NR      L   ++ +T   ++ LD+DNFK INDSLGH +GD++++ V+ R+ 
Sbjct: 1001 DLLTGLPNRSNLQVSLNNLVKKDTHHTLMVLDLDNFKKINDSLGHQVGDELLQLVSRRMS 1060

Query: 319  RLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLINQPFDLHHFSKRLACSIGS 378
              LP    L  LGGDEF ++L +     SA  +A  ++     PF+L      +  SIG 
Sbjct: 1061 AALPGHTSLYRLGGDEFAVLLDKDPDIGSAAAIAKGLVDAFVAPFELAGEKLVVGVSIGI 1120

Query: 379  VRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEARMRLWLEIELQKALQQN 438
            V YP D  + + LL+ AD AMY AK  G NR   +++ +N+ A  +L +E  ++  L+ +
Sbjct: 1121 VLYPEDEQNEQALLRKADIAMYHAKSAGGNRYQFYSESLNRNALRQLEVENLIRDGLRDD 1180

Query: 439  GLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMREV 498
              EV+YQPKV+ R+  + G EALVR  HP +G I P  FIP+AE+ GLI  +G +VMR+ 
Sbjct: 1181 LFEVYYQPKVDLRNSRMAGMEALVRLNHPTQGLIPPSEFIPLAEETGLIVEIGDLVMRKA 1240

Query: 499  FATVKRWKLQGILPGRVAINISPEQFGNPQLIDYLEKLLRTTGLDPNNITFELTESAVMS 558
                +RW+ QG+  GRVA+N+S  QF    L   +E +LR T L   N+  E+TE  V+ 
Sbjct: 1241 CFAAQRWREQGLFDGRVAVNLSSRQFALTDLQQRIESILRLTKLPAANLELEITEGTVIK 1300

Query: 559  DSEHTQQMLNAIKKLGFTLSIDDFGTGYSSLAYLARFPIDELKIDRAFISNIDTLPKQLT 618
              E   +++  + K+G +L++DDFGTGYSSL+YL RFPI  LKID+AF+ +ID   + L 
Sbjct: 1301 QPEKAIKVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTLKIDKAFVDDIDKSDRDLK 1360

Query: 619  VIENIINLGRSLNLTVVAEGVETQQQATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQN 677
            ++++II +  ++ LTVV EGVE   Q  +L  L C  +QG+ + +  P+ E   L  Q+
Sbjct: 1361 MVDSIITIAHNMGLTVVGEGVEVPSQLNILRALKCEEVQGYIYSKAVPEAEFTTLLKQD 1419



 Score = 27.3 bits (59), Expect = 0.005
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 4   QTSSQLKHWFAKITSHSPFFFAILNDQHQYVMVNERYCDIAGLSSEEMVG 53
           Q   QL+ +   I + S   F IL+ + ++V VNE  CDI  +  +  +G
Sbjct: 870 QAEEQLRLFERAIENISEGMF-ILDHEFRFVEVNEACCDICLMDKDSFIG 918