Pairwise Alignments

Query, 684 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1437 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  322 bits (825), Expect = 8e-92
 Identities = 165/418 (39%), Positives = 253/418 (60%)

Query: 259  DSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAARLK 318
            D LT L NR      L   ++ +T   ++ LD+DNFK INDSLGH +GD+++ +VA R++
Sbjct: 1006 DLLTSLPNRSSLMVTLGNLVKKDTHHTLMVLDLDNFKKINDSLGHQVGDELLIKVARRIE 1065

Query: 319  RLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLINQPFDLHHFSKRLACSIGS 378
              +P    +  LGGDEF +++       S+ ++A+ ++   + PF+L      +  SIG 
Sbjct: 1066 STVPYHTSIYRLGGDEFAILVDNNPDIGSSAVIANHVVDAFSSPFELTKDRVVVGVSIGI 1125

Query: 379  VRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEARMRLWLEIELQKALQQN 438
            V YP D  + + LL+ AD AMY AK  G NR   +++ +N+ A  +L +E  +++ L+ +
Sbjct: 1126 VLYPEDDQNEQALLRKADIAMYHAKSAGGNRYQFYSESLNRNAIRQLEVENLIREGLRDD 1185

Query: 439  GLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMREV 498
              EV+YQPK++ R   + G EALVR  HP  G I PG FIP+AE+ GLI  +G VV+R+ 
Sbjct: 1186 LFEVYYQPKIDLRTSKMAGMEALVRLNHPEHGLIPPGDFIPLAEENGLIVEIGEVVLRKA 1245

Query: 499  FATVKRWKLQGILPGRVAINISPEQFGNPQLIDYLEKLLRTTGLDPNNITFELTESAVMS 558
                + W+ Q +  GRVA+N+S +QF  P L   +E +LR T L   N+  E+TE  V+ 
Sbjct: 1246 CFAAQNWRRQNLFNGRVAVNLSSQQFALPDLQQRIESILRLTQLPAANLELEITEGTVIK 1305

Query: 559  DSEHTQQMLNAIKKLGFTLSIDDFGTGYSSLAYLARFPIDELKIDRAFISNIDTLPKQLT 618
              E   +++  + K+G +L++DDFGTGYSSL+YL RFPID LKID+AF+ +ID   + L 
Sbjct: 1306 QPEKAIKVMMQLSKMGVSLALDDFGTGYSSLSYLKRFPIDTLKIDKAFVDDIDKSDRDLK 1365

Query: 619  VIENIINLGRSLNLTVVAEGVETQQQATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQ 676
            ++++II +  ++ L+VV EGVE   Q ++L  L C  IQGF + +   +    EL  Q
Sbjct: 1366 MVDSIITIAHNMGLSVVGEGVEEASQLSILKALKCEEIQGFIYSKAVNETSFTELLKQ 1423



 Score = 27.3 bits (59), Expect = 0.005
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 4   QTSSQLKHWFAKITSHSPFFFAILNDQHQYVMVNERYCDIAGLSSEEMVG 53
           Q   QL+ +   I + S   F IL+++ ++V VNE  CD+   S  + +G
Sbjct: 875 QAEEQLRLFERAIENISEGMF-ILDNKFKFVEVNEACCDLCEKSRNDFIG 923