Pairwise Alignments

Query, 684 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1422 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  318 bits (815), Expect = 1e-90
 Identities = 180/525 (34%), Positives = 293/525 (55%), Gaps = 12/525 (2%)

Query: 143  LPDGLMMVENDC-IISANPSAARLLGFDDAQKLLGENLSRLFIDEKTKTVFSSQLASLLT 201
            + +G+ +++++   +  N +  R+     +Q+   + +  L   E     FS+Q+ ++L 
Sbjct: 877  ISEGMFILDSEYRFVEVNEACCRI-----SQRNRSDFIGNLLTFELYPESFSNQIRTMLK 931

Query: 202  EK-----PLVCLTGPRCGFERKIQLHAGCTSLLGNQSQLILLQDADEAPKQFSATTQVDA 256
            ++      +    G    F  ++ + A     LG  S  + +       KQ     +   
Sbjct: 932  QQGRWASEVEANRGDNSHFHMELTIDA-IYDELGELSHYVGVFSDISRRKQQEEELRKLT 990

Query: 257  HIDSLTGLYNRHGFTKRLEQCIQNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAAR 316
            + D LTGL NR      L   +  E    ++ LD+DNFK INDSLGH +GDK++K V+ R
Sbjct: 991  NNDLLTGLPNRSNLQVTLGNLVNKEINHALMVLDLDNFKRINDSLGHQVGDKLLKLVSVR 1050

Query: 317  LKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLINQPFDLHHFSKRLACSI 376
            +K  +P+   +  LGGDEF ++L +     ++  +A RI+   N  +++ +    L  S+
Sbjct: 1051 IKSSVPKNTNIYRLGGDEFAIVLDKTSDILASAAIAGRIVDAFNTVYEIDNEQLVLGVSV 1110

Query: 377  GSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEARMRLWLEIELQKALQ 436
            G V YP D  + + LL+ AD AMY AK  G N    +++ +N+ A  +L  E  +++ L+
Sbjct: 1111 GIVLYPDDEQNEQALLRKADIAMYHAKSAGGNCYQFYSESLNEHAIKQLETENLIREGLK 1170

Query: 437  QNGLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMR 496
            ++  EV+YQPKV+ +   + G EALVR  HP  G I P  FIP+AE+ GLI  +G +V+R
Sbjct: 1171 EDLFEVYYQPKVDLKHGHVAGMEALVRLNHPTLGLIPPNDFIPLAEENGLIVEIGEIVLR 1230

Query: 497  EVFATVKRWKLQGILPGRVAINISPEQFGNPQLIDYLEKLLRTTGLDPNNITFELTESAV 556
            +     ++W+ QG+  GRVA+N+S  QF  P L   +E +LR T L  +++  E+TE  V
Sbjct: 1231 KACFAAQKWREQGLFKGRVAVNLSSRQFALPDLQQRIESILRLTQLPASHLELEITEGTV 1290

Query: 557  MSDSEHTQQMLNAIKKLGFTLSIDDFGTGYSSLAYLARFPIDELKIDRAFISNIDTLPKQ 616
            +   E    ++  + K+G +L++DDFGTGYSSL+YL RFPI  LKID+AF+ +ID   + 
Sbjct: 1291 IKQPEMAITVMQQLAKMGVSLALDDFGTGYSSLSYLKRFPIHTLKIDKAFVDDIDKSDRD 1350

Query: 617  LTVIENIINLGRSLNLTVVAEGVETQQQATLLSNLNCHSIQGFHF 661
            L ++++II +  ++ L+VV EGVE   Q  +L  LNC  IQG+ F
Sbjct: 1351 LKMVDSIITIAHNMGLSVVGEGVEQAAQLNILRALNCEEIQGYIF 1395



 Score = 26.6 bits (57), Expect = 0.009
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 13/99 (13%)

Query: 4   QTSSQLKHWFAKITSHSPFFFAILNDQHQYVMVNERYCDIAGLSSEEMVG-MSDSQVLGE 62
           Q   QL+ +   I + S   F IL+ ++++V VNE  C I+  +  + +G +   ++  E
Sbjct: 862 QKEEQLRLFEKAIENISEGMF-ILDSEYRFVEVNEACCRISQRNRSDFIGNLLTFELYPE 920

Query: 63  HFYRHLKPFYER-----------AFNNEHIESELTLSEI 90
            F   ++   ++             +N H   ELT+  I
Sbjct: 921 SFSNQIRTMLKQQGRWASEVEANRGDNSHFHMELTIDAI 959