Pairwise Alignments

Query, 684 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1491 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  306 bits (784), Expect = 5e-87
 Identities = 194/564 (34%), Positives = 310/564 (54%), Gaps = 26/564 (4%)

Query: 125  LVRSLEESESKYALLTTLLPDGLMMVENDCIIS-ANPSAARLLGFDDAQKLLGENLSRLF 183
            L R LE+  S  A       +G+++++ D  I  AN +A  ++G  + + L+G + S+  
Sbjct: 925  LRRQLEDEVSLLAQAFENTSEGVLILDVDENIRVANHAAQHIIG-SEQKSLVGLSFSQFV 983

Query: 184  IDEKTKTVFSSQLASLLT-------EKPLVCLTGPRCGFERKIQLHAGCTSLLGNQSQL- 235
               + K   S+++A LL        E+ LV   G  C     + +         NQ+ + 
Sbjct: 984  ---QMKDGLSTEVAQLLGQETSWTGERELVGQNGLVCPVWLNVSVMQSV-----NQNAIH 1035

Query: 236  --ILLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFTKRLEQCIQ----NETPLVMLYL 289
              ++  D  E  K+  A  +  A+ D LTGL NR  F+ RL Q IQ    N   L +L+L
Sbjct: 1036 YVVVFSDITER-KRTEADLRRLANYDVLTGLPNRSLFSNRLMQSIQAAEQNGEKLALLFL 1094

Query: 290  DIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAE 349
            D+D FK++NDS GH +GD ++ E + RL+  +  + +L   GGDEF ++L   +      
Sbjct: 1095 DLDRFKHVNDSYGHSMGDALLVEASNRLQSCIGSEHLLCRFGGDEFVILLKNVKELSDIN 1154

Query: 350  MLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNR 409
             LA+++++ I  PF L      ++ SIG   +P D       ++NAD AMY AKE GR  
Sbjct: 1155 HLAEQLLAQIVAPFRLFGREFYISTSIGISIWPDDAMQPEAFIKNADLAMYHAKEEGRGN 1214

Query: 410  LIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNA-RDFSINGAEALVRWKHPV 468
               ++ + N +A   L LE +L+KA+++   E++YQP+++  R     G EAL+RW+HPV
Sbjct: 1215 FKYYSSERNAQALYHLRLEADLRKAIERQEFELYYQPQIDILRGDKFIGMEALIRWQHPV 1274

Query: 469  EGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRWKLQGILPGRVAINISPEQFGNPQ 528
            +G++ P  FI VAE  GL+  + R V+R       RW  Q I P ++++NIS   F  P 
Sbjct: 1275 DGFVRPDIFIKVAEACGLVVDIDRWVLRCACLDGARWAKQTIEPFKMSVNISAVHFRQPD 1334

Query: 529  LIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGTGYSS 588
             ID ++K+L  T +  +++  E+TE  +M + +  +  L  +  LG  ++IDDFGTGYSS
Sbjct: 1335 FIDGVKKILDATHMPASSLCLEITEGVLMKELQVAKTHLKQLDDLGIEVAIDDFGTGYSS 1394

Query: 589  LAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLGRSLNLTVVAEGVETQQQATLL 648
            LAYL  F +D LKIDR+F+ +I +      ++ +II L R+L LTV+AEGVET +Q   L
Sbjct: 1395 LAYLRNFEVDTLKIDRSFLIDIASNGADQAIVSSIIELARNLKLTVIAEGVETVEQLEQL 1454

Query: 649  SNLNCHSIQGFHFYRPQPKHEVEE 672
             +  C+ +QG++F +P    + E+
Sbjct: 1455 FSRGCYIVQGYYFAKPMSVSDFEK 1478