Pairwise Alignments

Query, 684 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  316 bits (810), Expect = 5e-90
 Identities = 190/537 (35%), Positives = 288/537 (53%), Gaps = 9/537 (1%)

Query: 155  IISANPSAARLLGFDDAQKLLGENLSRLFIDEKTKTVFSSQLASLLTEKPLVCLTGPRCG 214
            I S NP+ + + G+ + Q +  + L  L    + + +F+S    LL  K        R  
Sbjct: 979  IRSVNPAFSAITGYSEGQ-ISDKFLIHLAYSRQQRDLFNSIEQQLLRHKHWAGEIWIRNK 1037

Query: 215  FERKIQLHAGCTSLL---GNQSQLILLQDADEAPKQFSATTQVDAHIDSLTGLYNRHGFT 271
              R I +      ++   G  S  + +       K+     +  A  D+LTGL NR  F 
Sbjct: 1038 ARRAILVWLEINQVIDVKGETSHFVAVFTDITERKKAEEDLRFLASFDTLTGLPNRTLFQ 1097

Query: 272  KRLEQCI----QNETPLVMLYLDIDNFKNINDSLGHHIGDKVIKEVAARLKRLLPQQAVL 327
             RL   I    ++   + +L+LD+D FK+INDS+GHHIGD ++K VA RL+  + +   +
Sbjct: 1098 DRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLLLKAVAHRLQSAVREGDTV 1157

Query: 328  GHLGGDEFGLILPEPEHNRSAEMLADRIISLINQPFDLHHFSKRLACSIGSVRYPGDGND 387
              LGGDEF +IL      ++A +++++++     PF L   S  ++ SIG   YP D  D
Sbjct: 1158 ARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKSLNISTSIGISLYPNDAKD 1217

Query: 388  ARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPK 447
               L++ ADTAMY AK  GRN    + +++N+ A   + LE  L++A+  N L + YQPK
Sbjct: 1218 VDSLIKFADTAMYHAKALGRNNFQFYTNKLNEMATRHMQLETGLKQAISHNELSLVYQPK 1277

Query: 448  VNARDFSINGAEALVRWKHPVEGYISPGAFIPVAEKAGLIEHLGRVVMREVFATVKRWKL 507
               R+ S+ G EAL+RW+H   G ISP  FIP+AE+ G+I  +G  V+ +    +  W  
Sbjct: 1278 FCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMINQIGHWVINQSCQQLAEWNE 1337

Query: 508  QGILPGRVAINISPEQFGNPQLIDYLEKLLRTTGLDPNNITFELTESAVMSDSEHTQQML 567
             G     +A+N+S  Q     +I  +E  L  +GL    +  ELTES +M + + +  +L
Sbjct: 1338 LGFSDISMAVNLSARQL-KADIISTIEVALAVSGLPAKALELELTESMIMGNPQESVNIL 1396

Query: 568  NAIKKLGFTLSIDDFGTGYSSLAYLARFPIDELKIDRAFISNIDTLPKQLTVIENIINLG 627
            + +K LG T+++DDFGTGYSSL+YL RFPID LKIDR F+ +I   P    +   II L 
Sbjct: 1397 SKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFVRDITNDPDDAAITSAIIALA 1456

Query: 628  RSLNLTVVAEGVETQQQATLLSNLNCHSIQGFHFYRPQPKHEVEELFAQNRRHRKSL 684
             SL L VVAEGVETQ+Q   L+   C  +QGF   +P    + + L  Q  + R+ +
Sbjct: 1457 HSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSAQDCQTLLQQRTKDRQDV 1513