Pairwise Alignments

Query, 684 a.a., bifunctional diguanylate cyclase/phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 1413 a.a., sensory box/GGDEF domain/EAL domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  296 bits (757), Expect = 6e-84
 Identities = 169/422 (40%), Positives = 250/422 (59%), Gaps = 11/422 (2%)

Query: 259  DSLTGLYNRHGFTKRLEQCIQNET-----PLVMLYLDIDNFKNINDSLGHHIGDKVIKEV 313
            DSLTGL NR    +R+EQ              ++ +D+D FK INDS GH +GD++++ V
Sbjct: 972  DSLTGLPNRTLLLERIEQARLRSLRGKGRSFAVMMIDLDRFKIINDSHGHAVGDRLLQMV 1031

Query: 314  AARLKRLLPQQAVLGHLGGDEFGLILPEPEHNRSAEMLADRIISLINQPFDLHHFSKRLA 373
            +A ++ +L     +  LGGDEF ++L +    R    +A R+I  + +P  + +   R +
Sbjct: 1032 SAAVRPVLRPADTVARLGGDEFAILLEDVATPREVVHVARRVIKAVERPARVANKLLRTS 1091

Query: 374  CSIGSVRYPGDGNDARVLLQNADTAMYEAKERGRNRLIKFNDQMNKEARMRLWLEIELQK 433
             S+G V        A  LL++AD AMY+AKE+GR R   FN  M+++A   + LE +L  
Sbjct: 1092 ASVGIVLRTDGYGSADELLRDADIAMYQAKEQGRGRFRVFNRTMHQQAMDAMNLENDLGA 1151

Query: 434  ALQQNGLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGAFIPVAEKAGLIEHLGRV 493
            AL+    E+ YQP  + R  ++ G EALVRW+HP+ G I P AFIPVAE+ G+I  LG  
Sbjct: 1152 ALRWGQFELDYQPVFDTRSRALLGFEALVRWRHPLRGLIPPTAFIPVAEETGIITRLGHW 1211

Query: 494  VMREVFATVKRWKLQ--GILPGRVAINISPEQFGNPQLIDYLEKLLRTTGLDPNNITFEL 551
            V+      + RW+LQ  GI    VA+N+S  QF  P L   +   L+ TGL  + +  E+
Sbjct: 1212 VLETALTALARWRLQIPGIDDLYVAVNMSALQFAQPTLPGSVRDALQKTGLPASCLKVEI 1271

Query: 552  TESAVMSDSEHTQQMLNAIKKLGFTLSIDDFGTGYSSLAYLARFPIDELKIDRAFISNID 611
            TE+A+M D     Q ++A++ LG  + IDDFGTGYSSLAYL RFP+D LK+DR+F+S   
Sbjct: 1272 TETAIMQDPTTALQRISALRDLGVGIGIDDFGTGYSSLAYLQRFPVDTLKVDRSFVSQ-S 1330

Query: 612  TLPK---QLTVIENIINLGRSLNLTVVAEGVETQQQATLLSNLNCHSIQGFHFYRPQPKH 668
            T P+      ++  ++ L  SL+L VVAEGVET++Q   L+ L C ++QG+   RP P+ 
Sbjct: 1331 TTPEGEGNREIVRAVVVLAHSLSLAVVAEGVETEEQFAFLAGLGCDAVQGYLLSRPVPEA 1390

Query: 669  EV 670
            ++
Sbjct: 1391 DI 1392



 Score = 33.5 bits (75), Expect = 7e-05
 Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 13/174 (7%)

Query: 43  IAGLSSEEMVGMSDSQVLGEHFYRHL-KPFYERAFNNEHIESELTLSEIDLETSLHFSLS 101
           +A   +E+++G+S  +       RHL  P  + A++      E   ++  L T    + +
Sbjct: 325 MASNGTEDVLGVSPDEAPSR--LRHLLPPTKDGAWSQASFSIEAAHADGSLRTLDCLATT 382

Query: 102 PIMINDRVQYLVFHAIDTSEKQILVRSLEESESKYALLTTLLPDGLMMVEND-CIISANP 160
           P     R + LVF   DT+ + +  + +E    +Y  +    P G+  +  D  ++ AN 
Sbjct: 383 PDERGHR-RVLVF---DTTRRNLERQRVEAIHHRYMSILDNAPVGIFRIMPDGSMVGANR 438

Query: 161 SAARLLGFDDAQKLLGENLSRLFI---DEKTKTVFSSQLASL--LTEKPLVCLT 209
             ARL GF   ++LL    +R  I   D K   +  +++A+   L  + ++C T
Sbjct: 439 EMARLWGFSSPEELLASEEARRLILCDDPKACPLSFARIAASGGLVNEEVLCRT 492