Pairwise Alignments

Query, 337 a.a., protease from Vibrio cholerae E7946 ATCC 55056

Subject, 609 a.a., putative collagenase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  107 bits (266), Expect = 1e-27
 Identities = 95/308 (30%), Positives = 142/308 (46%), Gaps = 42/308 (13%)

Query: 1   MELLCPAGNLPALKTAIDCGADAVYIGFKDDTNARHFAGLNFSGKKLEKAVDYVHDHNKK 60
           +ELL PA NL     AI+ GADAVYIG      AR  A +N S + +E  V + H +N +
Sbjct: 7   IELLAPAKNLECGIEAINHGADAVYIG-APKFGARA-AAVN-SLEDIEALVKHAHLYNAR 63

Query: 61  IHIALNTFAHPNGFERWTNAVDQAADLGVDALIIADIAVLEYAARHYPHLELHLSVQASA 120
           I++ +NT       +     +     +GVDALI+ D+ + +    + P + LH S Q   
Sbjct: 64  IYVTVNTILKEEELKETEEMIHALYRVGVDALIVQDMGITKL---NLPPIPLHASTQMDN 120

Query: 121 TNVKAVEFYHQNFNVKRVVLPRVLSIHQVKQLSRNIPQGVELEVFAFGSLCIMSEGRCYL 180
              + V+F  +    ++VVL R LSI +++++    P+ V LEVF  G+LC+   G+CY+
Sbjct: 121 RTPEKVKFLWEA-GFRQVVLARELSIREIRKIHEICPE-VPLEVFVHGALCVSYSGQCYV 178

Query: 181 SSYMTGESPNTVGACSPAKYVRWQETESGLESRLNEILIDKYAAGENAGYPTLCKGRFIT 240
           S    G S N  G C+                RL   L+D              +G+ I 
Sbjct: 179 SQACFGRSANR-GECAQF-------------CRLPFSLVDS-------------EGKVIV 211

Query: 241 DIEGERKCYHALEEPTSLNTLSLLPELFAANVASVKIEGRQRSPAYVEQVTRTWRAAIDR 300
                 K  H L     +N    L  L  A  +S KIEGR +  +YV+ VT  +R  +D 
Sbjct: 212 ------KDKHLL-SLKDMNQSDELERLLDAGASSFKIEGRLKDVSYVKNVTAAYRQKLDA 264

Query: 301 YLANPAQY 308
             A   +Y
Sbjct: 265 IFARRPEY 272