Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., Na+ driven multidrug efflux pump from Pseudomonas fluorescens FW300-N2E2

 Score = 79.7 bits (195), Expect = 2e-19
 Identities = 100/435 (22%), Positives = 182/435 (41%), Gaps = 35/435 (8%)

Query: 21  MLVNGLYQVVDG----IFIGHYVGAEGLAGINVAWPVIGTILGIGMLVGVGTGALASIKQ 76
           M+++   Q + G    I+IG  +G + LA ++  +P++   + + + +G G G L     
Sbjct: 1   MVLSNFLQSMSGTFNSIYIGQMLGTQALAAVSGMFPIVFFFIALVIGLGAGAGVLIGQAY 60

Query: 77  GEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEGRVFELGLQYLQVLIV 136
           G G   + K I  + L+   ++    AV+    A   L+  G    V E  + Y +V++ 
Sbjct: 61  GAGETGTVKAIAGSTLLLGAIIGLAAAVLGSVFARQALQGLGTPADVLEDAVSYARVMLW 120

Query: 137 GCLFTLGSIAMPFLLR---NDHSPNLATLLMV-IGALTNIALDYLFIAWLQWELTGAAIA 192
                L  +    LLR   +  SP LA L    +G L   AL   ++   Q  +  AA+A
Sbjct: 121 ILPMLLIFVLFTQLLRGVSDTVSPMLALLTSTSVGLLLTPALIRGWLGLPQMGIQSAALA 180

Query: 193 TTLAQVVVTLLGLAYFFSARANMRLTRRCL----RLEWHSLPKIFAIGVSSFFMYAYGST 248
             L      +  LA+  + R +     R L    RL+   L K+  IG+ +       S 
Sbjct: 181 -GLVGTASAMAMLAWRLNRREHALAPDRALFAAMRLDMEILGKVLRIGLPTGLQMVVISL 239

Query: 249 MVALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQPLASYHFGARNYDHIRK 308
              +  TL+  +G+     AY  +  IV         IA     L +   GA   + +  
Sbjct: 240 SELVILTLVNSHGSQA-TAAYGAVTQIVNYVQFPALSIAITASILGAQAIGAGRLERLGP 298

Query: 309 LLR--------LAMGIAVLGGMAFVLVLNLFPEQAIAIFNSSDSELIAGAQMGIKLHLFA 360
           +LR        L  G+ VLG +    +L LF          +D      A+  + + L++
Sbjct: 299 ILRTGLLINLWLTGGLVVLGYLLSHWLLGLF---------ITDPAARVQAEHLLHIMLWS 349

Query: 361 MYLDGFLVVSAAYYQSTNRGGKAMFITVGNMSIM-LPFLFILPQFFGLTGVWIALPI--- 416
           + + GF  +     +++      + I++  + ++ +P  ++L   FGL GVW+A P+   
Sbjct: 350 LLVFGFQAIVGGIMRASGTVLVPVAISIFCIVVVQVPAAYLLDAHFGLQGVWVAFPVAYL 409

Query: 417 SNIVLSTVVGIMLWR 431
           S ++L T+    +W+
Sbjct: 410 SMLLLQTLYYKQVWQ 424