Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 437 a.a., DNA-damage-inducible protein F (RefSeq) from Shewanella amazonensis SB2B

 Score = 70.9 bits (172), Expect = 8e-17
 Identities = 75/309 (24%), Positives = 130/309 (42%), Gaps = 27/309 (8%)

Query: 5   SIYRQFVRYTIPTVAAMLVNGLYQVVDGIFIGHYVGAEGLAGINVAWPVIGTILGIGMLV 64
           S +++     +P + + +   L  +VD   +GH   A  L  + +   V   I+ +   +
Sbjct: 6   SAHQRLWALALPMMLSNITVPLLGLVDTAIMGHLSEAYYLGAVALGSTVFTLIVWLLGFL 65

Query: 65  GVGTGALASIKQGEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEGRVF 124
            + T  L +   G    ++ KRIL  GL   L    +V ++   + +  L W  A   V 
Sbjct: 66  RMATTGLTAQAWGASQGETQKRILMQGLTLALGAGLLVLLVQPVLLNTLLGWSDASAEVR 125

Query: 125 ELGLQYLQVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFIAWLQW 184
           +    Y  + I      L ++ M   L     P +A   +++  L NIALD LF+    W
Sbjct: 126 QYCRDYFAIRIWSLPLALANLVMLGWLLGRQQPKVAMWQLILANLVNIALDVLFVFGFGW 185

Query: 185 ELTGAAIATTLAQVVVTLLGLAYFFSARA--NMRLTRRCLRLEWHSLPKIFAIGVSSFF- 241
            + GAA+A+ +A +      +A FF+A+A   +      LR    +L ++F +    F  
Sbjct: 186 GVAGAALASVIADLCA--FSIAAFFTAKAWRTLACPSPVLRDIMANLGQLFRLNRDIFIR 243

Query: 242 ------MYAY--------GSTMVALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVE-GI 286
                  +A+        G T VA +  L+    N +M+ +YA+ G     YY   E G 
Sbjct: 244 SLCLQATFAFMTFKGAGLGDTTVAANAVLL----NFLMLTSYALDG---IAYYAEAETGA 296

Query: 287 ANGMQPLAS 295
           A G +  A+
Sbjct: 297 AVGRRDPAA 305



 Score = 24.6 bits (52), Expect = 0.006
 Identities = 33/221 (14%), Positives = 90/221 (40%), Gaps = 3/221 (1%)

Query: 224 LEWHSLPKIFAIGVSSFFMYAYGSTMVALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTV 283
           L W +  +++A+ +           +  +   +M     A  +GA A+   + T+    +
Sbjct: 3   LTWSAHQRLWALALPMMLSNITVPLLGLVDTAIMGHLSEAYYLGAVALGSTVFTLIVWLL 62

Query: 284 EGIANGMQPLASYHFGARNYDHIRKLLRLAMGIAVLGGMAFVLVLNLFPEQAIAIFNSSD 343
             +      L +  +GA   +  +++L   + +A+  G+  +LV  +     +  ++ + 
Sbjct: 63  GFLRMATTGLTAQAWGASQGETQKRILMQGLTLALGAGLLVLLVQPVLLNTLLG-WSDAS 121

Query: 344 SELIAGAQMGIKLHLFAMYLDGFLVVSAAYYQSTNRGGKAMF--ITVGNMSIMLPFLFIL 401
           +E+    +    + ++++ L    +V   +     +   AM+  I    ++I L  LF+ 
Sbjct: 122 AEVRQYCRDYFAIRIWSLPLALANLVMLGWLLGRQQPKVAMWQLILANLVNIALDVLFVF 181

Query: 402 PQFFGLTGVWIALPISNIVLSTVVGIMLWRDVNKMGKPTQV 442
              +G+ G  +A  I+++   ++      +    +  P+ V
Sbjct: 182 GFGWGVAGAALASVIADLCAFSIAAFFTAKAWRTLACPSPV 222