Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 505 a.a., MATE efflux family protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  114 bits (284), Expect = 9e-30
 Identities = 111/422 (26%), Positives = 190/422 (45%), Gaps = 24/422 (5%)

Query: 17  TVAAMLVNGLYQV--VDGIFIGHYVGAEGLAGINVAWPVIGTILGIGMLVGVGTGALASI 74
           + AA+ ++ L+ V  +D  F+     AE  A +  A  +      IG+ + +  GA  S 
Sbjct: 20  STAAVGISALFLVDLLDIFFLSLLGEAELAAAVGYAGTISFFTTSIGIGLSIALGAQVSR 79

Query: 75  KQGEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEGRVFELGLQYLQVL 134
             G    D+AKR+L + L+  L ++ +V++++       L   GA G+  EL   YL +L
Sbjct: 80  AIGAREIDNAKRLLMSSLLVTLAVSSLVSLLVSLNIPALLTLVGATGQTAELAADYLYIL 139

Query: 135 IVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFIAWLQWELTGAAIATT 194
           +    F   ++A+   LR      L+ +  ++G   N+ LD + I  L   + GAA+A+ 
Sbjct: 140 VPSLPFICLAMALGAALRAVGDAKLSMVSTLVGGGVNLVLDPILIFVLAMGIEGAAVASV 199

Query: 195 LAQVVVTLL-GLAYFFSARANMRLTRRCLRLEWHSLPKIFAIGVSSFFMYAYGSTMVALH 253
           LA++ V L+ G   F       + TR         L  IFAI   +              
Sbjct: 200 LARLSVMLVAGRGVFVKHGLGSKPTRDAF---VGDLKPIFAIAGPAMITNVATPIGNGFM 256

Query: 254 NTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQPLASYHFGARNYDHIRKLLRLA 313
              + E+G+A + G +AV+G +  + +  +  ++  + P+   +FGAR YD +R  L  +
Sbjct: 257 TRAIAEFGDAYVAG-WAVLGRLTPVAFGMIFALSGAIGPIVGQNFGARRYDRLRDCLTQS 315

Query: 314 MGIAVLGGMAFVLVLNLFPEQAIAIFN-SSDSELIAGAQMGIKLHLFAMYLDGFLVVSAA 372
           +    +  +   LVL L  +  ++ F+   DS    G         F  Y+  F V S A
Sbjct: 316 LLFCTVYVVGMALVLFLAQDLIVSAFDLKGDSAEFIG--------FFLTYIAVFFVFSGA 367

Query: 373 YY---QSTNRGGKAMFITVGNMSI----MLPFLFILPQFFGLTGVWIALPISNIVLSTVV 425
            +    S N  GKA + TV N+       LPF+++  Q+ G+ GV I   + + VL  V 
Sbjct: 368 LFVANASFNNLGKAKYSTVFNVGKATLGTLPFIWLGAQYGGVYGVLIGQVLGS-VLFGVA 426

Query: 426 GI 427
           G+
Sbjct: 427 GV 428