Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., MATE efflux family protein (RefSeq) from Shewanella loihica PV-4

 Score =  114 bits (284), Expect = 9e-30
 Identities = 112/435 (25%), Positives = 194/435 (44%), Gaps = 31/435 (7%)

Query: 17  TVAAMLVNGLYQV--VDGIFIGHYVGAEGLAGINVAWPVIGTILGIGMLVGVGTGALASI 74
           + AA+ ++ L+ V  +D  F+      E  A +  A  +      IG+ + +  GAL S 
Sbjct: 20  STAAIGISALFVVDLIDIFFLSLLGEQELAAAVGYAGTISFFTTSIGIGLSIALGALVSR 79

Query: 75  KQGEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEGRVFELGLQYLQVL 134
             G    + AKR+L    +  +L+A +VA+I+     + L   GA GR  EL   YL +L
Sbjct: 80  AVGAKEFELAKRLLLNSAVVTVLVASVVAIIVTCFIPELLTLVGATGRTGELAAGYLYIL 139

Query: 135 IVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFIAWLQWELTGAAIATT 194
           +        ++A+   LR      L+ +  + G   N+  D +FI  L   + GAA+A+ 
Sbjct: 140 VPSMPIICLAMALGAALRAVGDAKLSMVSTLTGGGVNLVFDPIFIFLLAMGIEGAALASV 199

Query: 195 LAQVVVTLLGLAYFFSARA----NMRLTRRCLRLEWHSLPKIFAIGVSSFFMYAYGSTMV 250
           LA++ V L+      +AR     +    R  L      +  IFAI   +           
Sbjct: 200 LARLAVLLV------AARGVVVKHKLFGRFDLTAFKEDIKPIFAIAGPAMMTNIATPIGN 253

Query: 251 ALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQPLASYHFGARNYDHIRKLL 310
           A+    + E+G++  V A+AV+G +  + +  +  ++  + P+   +FGAR +  +R+ L
Sbjct: 254 AVVTRAIAEFGDS-YVAAWAVLGRLTPVAFGMIFALSGAIGPIVGQNFGAREFARVRQSL 312

Query: 311 RLAMGIAVLGGMAFVLVLNLFPEQAIAIF--NSSDSELIAGAQMGIKLHLFAMYLDGFLV 368
             A+    L  +   L+L L  EQ +A+F      +ELI           F  Y+  F V
Sbjct: 313 TKALQFCALYVVTVSLLLMLLQEQIVALFAMQGESAELI---------RFFCRYIAVFFV 363

Query: 369 VSAAYY---QSTNRGGKAMFITVGNMSI----MLPFLFILPQFFGLTGVWIALPISNIVL 421
            S A +    S N  GKA + T+ N+       +PF++   Q  G+ GV I   +  I+ 
Sbjct: 364 FSGALFVANASFNNLGKAKYSTLFNVGKATLGTIPFVYYGGQLGGVEGVLIGQVLGAILF 423

Query: 422 STVVGIMLWRDVNKM 436
             +  +  +R V+K+
Sbjct: 424 GVLGVLTAYRLVDKV 438