Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., DNA-damage-inducible protein F (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 72.4 bits (176), Expect = 3e-17
 Identities = 100/461 (21%), Positives = 183/461 (39%), Gaps = 60/461 (13%)

Query: 1   MMNRSIYRQFVRYTIPTVAAMLVNGLYQVVDGIFIGHYVGAEGLAGINVAWPVIGTILGI 60
           + N +  RQ     +P + + +   L  +VD   IGH   A  L G+ +   +I  I+ +
Sbjct: 12  LFNGTKNRQLFALALPMILSNITVPLLGLVDTAVIGHLSDAYYLGGVALGSTIITLIIWL 71

Query: 61  GMLVGVGTGALASIKQGEGHPDSAKRILATGLM--------SLLLLAPIVAVILWFMADD 112
              + + T  L +   G    ++  ++L  G M         +LL  P++++ L F    
Sbjct: 72  LGFLRMATTGLVAQAYGANDINAQLKLLVQGAMLATGLGIAMILLQVPLLSLALSFSE-- 129

Query: 113 FLRWQGAEGRVFELGLQYLQVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNI 172
                 A   V     +Y Q+ I    F L ++ M   L     P  A   ++   + NI
Sbjct: 130 ------ASVEVERYCREYFQIRIWSTPFALLNLVMLGWLLGRQQPKAAMWQLIFANVANI 183

Query: 173 ALDYLFIAWLQWELTGAAIATTLAQVV------------VTLLGLAYFFSARANMRLT-- 218
            LD LF+    W + GAA+A+  A +             V L+    F   RA++R T  
Sbjct: 184 ILDVLFVLGFGWGVKGAALASVFADITAFSVALYMVLQQVKLIPNYPFAEIRAHIRFTGF 243

Query: 219 RRCLRLEWHSLPKIFAIGVSSFFMYAYGSTMVALHNTLMIEYGNAVMVGAYAVMGYIVTI 278
            + LRL      +   +  +  FM  +G+ +    NT+     NAV++    ++ Y    
Sbjct: 244 GQLLRLNSDIFIRSLCLQTAFAFMTFHGAGLG--DNTVA---ANAVLLNLLLLISY---- 294

Query: 279 YYLTVEGIANGMQPLASYHFGARNYDHIRKLLRLAMGIAVLGGMAFVLVLNLFPEQAIAI 338
               ++GIA   +      +G +    + + + LA   + +  + F L+ +L+    I +
Sbjct: 295 ---ALDGIAYYAEAEVGKAYGQKRAQQLHEAVVLAWCWSAITALGFTLIFSLWGSHIIEL 351

Query: 339 FNSSDSELIAGAQMG------IKLHLFAMYLDGFLVVSAAYYQSTNRGGKAMFITVGNMS 392
             S D E+   AQ+       + L  F+ YL   + + AA        GK M     N  
Sbjct: 352 LTSID-EVRTTAQIYLIWLVLLPLWSFSSYLFDGVYIGAAQ-------GKVM----RNSM 399

Query: 393 IMLPFLFILPQFFGLTGVWIALPISNIVLSTVVGIMLWRDV 433
           I+  F    P ++ L  +  +   ++ + + +   ML R +
Sbjct: 400 IIATFGAFFPTWYLLQSLLPSEQANHALWAAMTAFMLMRSL 440