Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 501 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  109 bits (273), Expect = 2e-28
 Identities = 105/433 (24%), Positives = 196/433 (45%), Gaps = 27/433 (6%)

Query: 17  TVAAMLVNGLYQV--VDGIFIGHYVGAEGLAGINVAWPV--IGTILGIGMLVGVGTGALA 72
           + AA+ ++ L+ V  +D  F+      E  A +  A  +    T++GIG+ + +G  AL 
Sbjct: 20  STAAVGISALFVVDLLDIFFLSLLGEHELAAAVGYAGSISFFTTLIGIGLSIALG--ALV 77

Query: 73  SIKQGEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEGRVFELGLQYLQ 132
           S   G    + AKR+L    +   L++  V++++     + +   GA G   EL   YL 
Sbjct: 78  SRSIGAKDVELAKRLLLNSAVVTTLISVFVSIVVTTFIPELVTLVGASGHTAELAESYLY 137

Query: 133 VLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFIAWLQWELTGAAIA 192
           +L+    F   ++A+   LR+     L+ +  + G   N  LD +FI      + GAA+A
Sbjct: 138 ILVPSLPFICLAMALGGALRSVGDAKLSMMSTLAGGGVNAVLDPIFIFLFAMGIEGAALA 197

Query: 193 TTLAQVVV-TLLGLAYFFSARANMRLTRRCLRLEWHSLPKIFAIGVSSFFMYAYGSTMVA 251
           + LA++ V  + G       +   +  R   + +   L  IFAI   +           A
Sbjct: 198 SVLARITVFVIAGRGVMVKHQLLGKFNRSDFKAD---LKPIFAIAGPAILTNIATPIGNA 254

Query: 252 LHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQPLASYHFGARNYDHIRKLLR 311
                + ++G+A + G +AV+G +V + +  +  ++  + P+   +FGA  +D +R+ L 
Sbjct: 255 FVTRAIADFGDAYVAG-WAVLGRLVPVTFGMIFALSGAIGPIVGQNFGAGRFDRVRESLT 313

Query: 312 LAMGIAVLGGMAFVLVLNLFPEQAIAIFN-SSDSELIAGAQMGIKLHLFAMYLDGFLVVS 370
            A+    L  +   L+L L   Q +++F+   DS  +        +  F  Y+  F + S
Sbjct: 314 KAIQFCTLYVVVMSLLLFLLKSQIVSLFDMKGDSAAL--------IEFFCSYIAVFFIFS 365

Query: 371 AAYY---QSTNRGGKAMFITVGNMSI----MLPFLFILPQFFGLTGVWIALPISNIVLST 423
              +    S N  GKA + T+ N+       +PF+++  Q  G+ GV I   I +I+   
Sbjct: 366 GILFVANASFNNLGKAKYSTLFNVGKATLGTVPFVYVGAQLGGVYGVLIGQVIGSILFGV 425

Query: 424 VVGIMLWRDVNKM 436
           V   + +R V+K+
Sbjct: 426 VGVWVAYRLVDKV 438