Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  267 bits (683), Expect = 4e-76
 Identities = 141/421 (33%), Positives = 238/421 (56%)

Query: 1   MMNRSIYRQFVRYTIPTVAAMLVNGLYQVVDGIFIGHYVGAEGLAGINVAWPVIGTILGI 60
           ++   I + F RYTIPT+A+MLV G+Y  +DGIF+GHY+G  GLAG+ +A+PV   +  I
Sbjct: 13  LLQEPIAKLFWRYTIPTIASMLVTGVYVTIDGIFVGHYLGETGLAGMMLAYPVGAILYAI 72

Query: 61  GMLVGVGTGALASIKQGEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAE 120
           G ++G+G+ AL SI  G+G+   A+++L       LL     A++    + D L   GAE
Sbjct: 73  GAMIGMGSAALVSINLGQGNVAKARKLLGNAFSLCLLAGAFFALVGGVFSRDILIALGAE 132

Query: 121 GRVFELGLQYLQVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFIA 180
           G + E   +YL      C F + S+A   LLRND  P++ T ++++G + N  LD+LFI 
Sbjct: 133 GEILENANEYLFWYFALCHFPIISMAFTTLLRNDGRPSMVTFVLILGGVLNTFLDWLFIV 192

Query: 181 WLQWELTGAAIATTLAQVVVTLLGLAYFFSARANMRLTRRCLRLEWHSLPKIFAIGVSSF 240
              + L GAAIAT L+Q V  LL L +FF AR  +++    ++L+  +   I  +G+ SF
Sbjct: 193 VFPFGLAGAAIATMLSQAVTGLLCLQHFFGARTQLKINLEQMKLKLDNCINIARVGLPSF 252

Query: 241 FMYAYGSTMVALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQPLASYHFGA 300
            M  Y S ++ LHNT  +  G  + V AY V+ Y    +YL  EGIA G QP+ S++ GA
Sbjct: 253 LMNLYLSIVLTLHNTAFLWVGGPLHVAAYGVVSYTEAFFYLIFEGIALGTQPIYSFNAGA 312

Query: 301 RNYDHIRKLLRLAMGIAVLGGMAFVLVLNLFPEQAIAIFNSSDSELIAGAQMGIKLHLFA 360
             +D +++   +A  + +L     ++++   PE  + +F   +  L   A  G++ + + 
Sbjct: 313 GRFDRVKQARNIAFSMTLLTAALGLVLIYSRPEWLVYLFAGDNPSLTPVAIEGMRWYFWG 372

Query: 361 MYLDGFLVVSAAYYQSTNRGGKAMFITVGNMSIMLPFLFILPQFFGLTGVWIALPISNIV 420
           + ++G ++V A+++Q+ N   +A  +T   + ++   ++     FG+ GVW++L   + +
Sbjct: 373 LPMEGLILVGASFFQAINCSKQASILTGAKLILIAAIIYCFAWAFGVIGVWVSLATCSTM 432

Query: 421 L 421
           L
Sbjct: 433 L 433