Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., MATE efflux family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 75.9 bits (185), Expect = 2e-18
 Identities = 91/457 (19%), Positives = 194/457 (42%), Gaps = 26/457 (5%)

Query: 1   MMNRSIYRQFVRYTIPTVAAMLVNGLYQVVDGIFIGHYVGAEGLAGINVAWPVIGTILGI 60
           +++  I R  +  ++P +  ++    + + D  FI   +G E LA I+  +PV  T++  
Sbjct: 7   LLSAPIGRVLLNMSLPNLIGIMTILGFSLADTFFISQ-LGTEALAAISFTFPV--TLIIS 63

Query: 61  GMLVGVGTGALASIKQ--GEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQG 118
            + +GVG G   ++ +  G G+   AK  L   L+   +L   ++ +     +      G
Sbjct: 64  SIAIGVGAGVSTNLGRLIGSGNAPQAKVFLHDALLLTFILIASLSALGSIFIEPLFSLLG 123

Query: 119 AEGRVFELGLQYLQVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLF 178
           A      L   Y+    VG    +  +     LR+        ++M + A+ N+ LD L 
Sbjct: 124 ANETSLPLIHDYMMYWYVGAPLLVLLMVGNQGLRSTGDTRSPAMIMTLAAIINLILDPLL 183

Query: 179 IAWL----QWELTGAAIATTLAQVVVT-----LLGLAYFFSARANMRLTRRCLRLEWHSL 229
           I  +    + E+ GAAIAT  + +V       LL + +    RA   + R  +R  W  L
Sbjct: 184 IFGIGPFPRLEIQGAAIATLFSWLVALSLSGYLLIIKHRMLERAAFDIDR--MRANWSKL 241

Query: 230 PKIFAIGVSSFFMYAYGSTMVALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANG 289
             I         +    + ++      M+ + +   V A+     + ++  + V  +++ 
Sbjct: 242 AHIAQPAALMNLINPLANAVI----MAMLAHIDHSAVAAFGAGTRLESVLLIVVMALSSS 297

Query: 290 MQPLASYHFGARNYDHIRKLLRLAMGIAVLGGMAFVLVLNLFPEQAIAIFNSSDSELIAG 349
           + P  + + GA      ++ L L++   ++      + L  F +   ++F S+D +++  
Sbjct: 298 LMPFIAQNLGAGQPQRAKQALLLSLKFILVFQTLLYIPLAFFAQPLASLF-STDPQVLEW 356

Query: 350 AQMGIKLHLFAMYLDGFLVVSAAYYQSTNRGGKAMFITVGNM-SIMLPFLFILPQFFGLT 408
               I +   A    G +++ A    + +R   ++ I +  +  +MLP   +     G+ 
Sbjct: 357 LSFYILVLPCAYGPLGIVIIFATALNAYHRPMSSLVINLCRLVLLMLPLAALGSYIDGVK 416

Query: 409 GVWIALPISNIVLSTVVGIMLWRDVNKMGKPTQVSYA 445
           G+ +ALPI+N+++    GI  +    ++ +P + + A
Sbjct: 417 GLLLALPITNLLM----GIACYYLAQRICEPVKATTA 449