Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., cation efflux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  187 bits (476), Expect = 5e-52
 Identities = 122/410 (29%), Positives = 207/410 (50%), Gaps = 5/410 (1%)

Query: 12  RYTIPTVAAMLVNGLYQVVDGIFIGHY--VGAEGLAGINVAWPVIGTILGIGMLVGVGTG 69
           +  +P VAA  VN LY +VD I+IGH   +G + LAG+ V   +I  I     +VG G  
Sbjct: 20  KMALPAVAAQFVNLLYSIVDRIYIGHIPGIGTDALAGVGVTTSLIILISSFSAIVGGGGA 79

Query: 70  ALASIKQGEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEGRVFELGLQ 129
            LA+I  G+G    A +IL  G + L+L   + +VI +   +  L + GA     E  + 
Sbjct: 80  PLAAIALGQGDRVRAGKILGNGFVLLILFTLLTSVIAYTFMEPILLFTGASENTLEYAVD 139

Query: 130 YLQVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFIAWLQWELTGA 189
           YL + ++G +F   S  +   +     P +A   ++IGAL NI LD +FI W    + GA
Sbjct: 140 YLSIYLLGTIFVEISTGLNSFINAQGRPAIAMFSVLIGALLNIILDPIFIFWFDMGVKGA 199

Query: 190 AIATTLAQVVVTLLGLAYFFSARANMRLTRRCLRLEWHSLPKIFAIGVSSFFMYAYGSTM 249
           A+AT L+Q    +  +++ FS RA++ L +R + L+   +  I A+GVS F M +  S +
Sbjct: 200 ALATVLSQACSAVWVVSFLFSRRASLPLEKRYMGLDRKIILSILALGVSPFIMASTESLV 259

Query: 250 VALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQPLASYHFGARNYDHIRKL 309
             + N+ + E+G+ + + A  ++   +    + + G A G  P+ SY+FG  +   ++  
Sbjct: 260 GFVLNSSLKEFGD-IYISALTILQSSMQFASVPLTGFAQGFVPIISYNFGHGDKQRVKDC 318

Query: 310 LRLAMGIAVLGGMAFVLVLNLFPEQAIAIFNSSDSELIAGAQMGIKLHLFAMYLDGFLVV 369
            R+ +       +  +L + LFP    + F +SD  LI   +  + + L  M + G    
Sbjct: 319 FRIVLVTMFSFNLILMLFMILFPSTVASAF-TSDERLIETVRWTMPVFLGGMTIFGLQRA 377

Query: 370 SAAYYQSTNRGGKAMFITVGNMSIML-PFLFILPQFFGLTGVWIALPISN 418
               + +  +   ++FI +   +I+L P   ILP F G+TGV+ A  IS+
Sbjct: 378 CQNMFVALGQARISIFIALLRKAILLIPLALILPNFMGVTGVYAAEAISD 427