Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., putative Na+-driven multidrug efflux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  226 bits (577), Expect = 9e-64
 Identities = 129/436 (29%), Positives = 232/436 (53%), Gaps = 2/436 (0%)

Query: 6   IYRQFVRYTIPTVAAMLVNGLYQVVDGIFIGHYVGAEGLAGINVAWPVIGTILGIGMLVG 65
           I +  ++Y IP + AM  + LY +VD IFIGH VGA  ++G+ + +P++      G LVG
Sbjct: 15  IGKLLMQYAIPAIIAMTASSLYNMVDSIFIGHGVGAMAISGLALTFPLMNLAAAFGSLVG 74

Query: 66  VGTGALASIKQGEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEGRVFE 125
           VG   L S+K G+   D+A+R+L   L+  +++     V+     D  L + G       
Sbjct: 75  VGAATLVSVKLGQKDYDTAQRVLGNVLVLNIIIGLAFTVLTLIFLDPILYFFGGSEATVG 134

Query: 126 LGLQYLQVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFIAWLQWE 185
               Y+ V++ G + T   + +  +LR+   P  A    +   + N  LD +FI    W 
Sbjct: 135 YARDYMVVILWGNVITHLYLGLNAVLRSAGHPQKAMYATIATVVINTILDPIFIYGFGWG 194

Query: 186 LTGAAIATTLAQVVVTLLGLAYFFSARANMRLTRRCLRLEWHSLPKIFAIGVSSFFMYAY 245
           + GAAIAT  AQV+  L     F +    +   +   RL+   +    AIG++ F M   
Sbjct: 195 IQGAAIATITAQVIALLWQFKLFSNKDELLHFHKGIFRLKKKIVFDSLAIGMAPFLMNLA 254

Query: 246 GSTMVALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQPLASYHFGARNYDH 305
              +V L N  + ++G  + +GA+ ++  +V ++ + V G+  GMQP+A Y+FGA+ Y  
Sbjct: 255 ACFIVILINKGLKQHGGDLAIGAFGIVNRLVFLFVMIVMGLNQGMQPIAGYNFGAKQYPR 314

Query: 306 IRKLLRLAMGIAVLGGMAFVLVLNLFPEQAIAIFNSSDSELIAGAQMGIKLHLFAMYLDG 365
           + ++L++ +  A +      L+    P+ A++IF + + EL+  +  G+++ +    + G
Sbjct: 315 VTQVLKITIYAATIVTTIGFLMGMFIPQLAVSIFTTHE-ELVNISAKGLRIVVMFFPIVG 373

Query: 366 FLVVSAAYYQSTNRGGKAMFITVG-NMSIMLPFLFILPQFFGLTGVWIALPISNIVLSTV 424
           F +V++ ++QS     KA+F+++   + +++P L ILP+F+G  GVWI++PIS+++ S +
Sbjct: 374 FQMVTSNFFQSIGMASKAIFLSISRQVLVLIPCLLILPRFYGQLGVWISMPISDLIASLI 433

Query: 425 VGIMLWRDVNKMGKPT 440
            G MLW    +  K T
Sbjct: 434 AGGMLWWQFRQFRKAT 449