Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 440 a.a., BexA, putative cation effux pump (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 79.3 bits (194), Expect = 2e-19
 Identities = 88/415 (21%), Positives = 175/415 (42%), Gaps = 36/415 (8%)

Query: 7   YRQFVRYTIPTVAAMLVNGLYQVVDGIFIGHY----VGAEGLAGINVAWPVIGTILGIGM 62
           Y+Q      P + ++L+  L  + D +F+GH     +GA  LAGI         I  +G 
Sbjct: 5   YKQIWLINFPVMMSILMEQLINITDAVFLGHVGEIELGASALAGIYYL-----AIYMLGF 59

Query: 63  LVGVGTGALASIKQGEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEGR 122
              +G   + + + GE H     R    GL  L+++A ++ +++  ++   L+       
Sbjct: 60  GFSIGLQVMIARRNGEQHYKETGRTFFQGLYFLMVMAIMLCLLIHLVSPFILQQLITSDE 119

Query: 123 VFELGLQYLQVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFIAWL 182
           +++  ++YL     G LF+   +A    L    +  L +   +     NI  +YL I  L
Sbjct: 120 IYQAVIRYLNWRSFGLLFSFPFLAFRAFLVGVTNTKLLSGAALTAVCINIPFNYLLIFKL 179

Query: 183 QWELTGAAIATTLAQVVVTLLGLAYF----------FSARANMRLTRRCLRLEWHSLPKI 232
              ++GAA+A+++A+    L+ L Y            SA  + RL  + L+L   S+   
Sbjct: 180 DMGISGAAMASSIAEFGAFLILLLYMCKTVDKKKYGLSAVYDGRLLMKLLQLSVWSMLHA 239

Query: 233 FAIGVSSFFMYAYGSTMVALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQP 292
           F I V+ +F++            + IE+     +    +   + T++++ V   A+    
Sbjct: 240 F-ISVAPWFLF-----------FVAIEHLGKTELAISNITRSVSTLFFVIVNSFASTTGS 287

Query: 293 LASYHFGARNYDHIRKLLRLAMGIAVLGGMAFVLVLNLFPEQAIAIFNSSDSELIAGA-- 350
           L S   G      +  + R  + +  + G+  +L   L+  Q I  F +++  L+  A  
Sbjct: 288 LVSNLIGGGQGKELFPVCRKVLRLGYVVGLPLILTA-LWGNQWIIGFYTNNDYLVKLAFW 346

Query: 351 QMGIKLHLFAMYLDGFLVVSAAYYQSTNRGGKAMFITVGNMSIMLPFLFILPQFF 405
              + L  +   L G++ ++A     T +   A    +  + I L +L++L + F
Sbjct: 347 PFIVMLLNYVFALPGYVYINAV--TGTGKTRLAFVFQLVTILIYLIYLYLLSECF 399