Pairwise Alignments

Query, 445 a.a., MATE family efflux transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., putative membrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  221 bits (563), Expect = 4e-62
 Identities = 124/437 (28%), Positives = 236/437 (54%), Gaps = 6/437 (1%)

Query: 5   SIYRQFVRYTIPTVAAMLVNGLYQVVDGIFIGHYVGAEGLAGINVAWPVIGTILGIGMLV 64
           SI +  ++Y+IP +  M +  +Y ++D IFIGH VGA  +AG+ V++P++  ++    LV
Sbjct: 13  SIGKLLLQYSIPAIIGMTITSIYNIIDSIFIGHGVGAMAIAGLAVSFPLMNLVVAFCTLV 72

Query: 65  GVGTGALASIKQGEGHPDSAKRILATGLMSLLLLAPIVAVILWFMADDFLRWQGAEGRVF 124
             G   +ASI+ G+     A  IL+  LM  +  +    ++ +   DD L + GA     
Sbjct: 73  SAGGSTIASIRLGQKDMKGATEILSHTLMLCITNSFFFGILSFIFLDDILTFFGASPDTL 132

Query: 125 ELGLQYLQVLIVGCLFTLGSIAMPFLLRNDHSPNLATLLMVIGALTNIALDYLFIAWLQW 184
                ++QV+++G   T   I +  ++R    P  A L  ++  + NI L  +FI   +W
Sbjct: 133 PYARSFMQVILLGTPITYTMIGLNNVMRATGYPKKAMLTSMVTVVANIILAPIFIFHFEW 192

Query: 185 ELTGAAIATTLAQVVVTLLGLAYFFSARANMRLTRRCLRLEWHSLPKIFAIGVSSFFMYA 244
            + GAA AT ++Q++  +  +++F    + +    +  +++   +  IFAIG+S F M  
Sbjct: 193 GMRGAATATVISQLIGMVWVVSHFCKKDSTVHFEGKVWKMKGRIVESIFAIGMSPFLMNV 252

Query: 245 YGSTMVALHNTLMIEYGNAVMVGAYAVMGYIVTIYYLTVEGIANGMQPLASYHFGARNYD 304
               +V + N  + E+G  + +GAY ++  ++T+Y + V G+  GMQP+  Y+FGA+  D
Sbjct: 253 CACAIVIVINNSLQEHGGDMAIGAYGIINRLLTLYVMIVLGLTMGMQPIVGYNFGAQKID 312

Query: 305 HIRKLLRLAMGIAVLGGMAFVLVLNLFPEQAIAIFNSSDSELIAGAQMGIKLHLFAMYLD 364
            +++ L+L +   V+   +  L+   FP    A+F  SD ELI  A  G++L +      
Sbjct: 313 RVKQTLKLGIISGVVITSSGFLICEFFPHAVSAVFTDSD-ELIGLAVDGLRLTVLMFPFV 371

Query: 365 GFLVVSAAYYQSTNRGGKAMFITVGNMSI-MLPFLFILPQFFGLTGVWIALPISNIV--L 421
           G  +V   ++QS  +   ++F+++    + +LP L + P ++GL G+WI+LP+S+ +  +
Sbjct: 372 GAQIVIGNFFQSIGKVKISIFLSLTRQLLYLLPCLLLFPHWWGLKGIWISLPVSDSLAFI 431

Query: 422 STVVGIMLWRDVNKMGK 438
           + V+ +M++  + K+ K
Sbjct: 432 TAVISLMIY--IKKVSK 446