Pairwise Alignments

Query, 303 a.a., lipoprotein NlpI from Vibrio cholerae E7946 ATCC 55056

Subject, 923 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 43.5 bits (101), Expect = 2e-08
 Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 13/151 (8%)

Query: 22  QNESATQWLYPPMAVPLQASIQQEVQIARLSQLLQRTDLEPEIRAKMLFERGNYY----D 77
           Q  +A Q  Y       QA  + E  IA+L +LL      P+  A +  +   YY     
Sbjct: 2   QITAAAQHDYQQAIAAYQAG-EFEAAIAQLDRLLGDV---PDWAAALGLQGLCYYCCDQK 57

Query: 78  SVGLRDLARLDFTQSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDSTLELDPSNEYAV 137
             G+  L R     +++++P  P  FN LG      G    A E     L +DP++  A 
Sbjct: 58  ETGITLLRR-----AIALDPTDPTHFNNLGNLLQRQGHLTEALERLTQALAIDPTHVAAR 112

Query: 138 RNRAIALYYGERPQLALEEITKHYQQDPQDP 168
            NRAI L     P  AL++  +  + DP +P
Sbjct: 113 FNRAITLQKLGDPATALQDYQQLLEADPDNP 143



 Score = 28.5 bits (62), Expect = 6e-04
 Identities = 16/69 (23%), Positives = 30/69 (43%)

Query: 91  QSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDSTLELDPSNEYAVRNRAIALYYGERP 150
           Q+++I P +P     LG    + G++  A ++     EL P+       R+   YY  + 
Sbjct: 491 QAVAIAPEEPSFHRALGRSLKQQGDYAGAAQALAIACELAPTQAEFWHERSSLEYYDNQL 550

Query: 151 QLALEEITK 159
             AL  + +
Sbjct: 551 TAALNSLNQ 559



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 15/162 (9%)

Query: 22  QNESATQWLY----------PPMAVPLQASIQQEVQIARLSQLLQRTDLEPEIRAKMLFE 71
           QN    +WL           P     L  S++Q+   A  +Q L         +A+   E
Sbjct: 480 QNWPRAEWLIRQAVAIAPEEPSFHRALGRSLKQQGDYAGAAQALAIACELAPTQAEFWHE 539

Query: 72  RGN--YYDSVGLRDLARLDFTQSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDSTLEL 129
           R +  YYD+     L  L+  Q++++  A  D     GV +   G+F  +   +D+   +
Sbjct: 540 RSSLEYYDNQLTAALNSLN--QAIALQGATADHLISRGVLHYRLGQFPESCADYDAAAAI 597

Query: 130 DPSNEYAVRNRA-IALYYGERPQLALEEITKHYQQDPQDPFR 170
            P +     NR  + L++G   Q   +   +   Q   DPF+
Sbjct: 598 APESPLLRCNRGFLQLHWGNWLQGWPDLEVRFDFQSDLDPFQ 639