Pairwise Alignments

Query, 303 a.a., lipoprotein NlpI from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

 Score = 47.8 bits (112), Expect = 4e-10
 Identities = 37/148 (25%), Positives = 68/148 (45%), Gaps = 7/148 (4%)

Query: 8   IAVIGLVLLSGCATQNESATQWLYPPMAVPLQASIQQEVQIARLSQLLQRTDLEPEIRAK 67
           + VI ++L++GC    +S +   Y    + L         I+  +  L    LE    A+
Sbjct: 8   LTVILVLLMAGCIGDQKSKS---YNDKGLELYNQGNYVDSISEYNLAL----LENPKSAE 60

Query: 68  MLFERGNYYDSVGLRDLARLDFTQSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDSTL 127
           +   +GN    +G+   +   F ++L I+P   + FN LG   ++ G +  A E +D +L
Sbjct: 61  IWVNKGNSLLKLGIYGESTECFDKALLIDPENSEAFNGLGTVLSKTGNYQKALEMYDKSL 120

Query: 128 ELDPSNEYAVRNRAIALYYGERPQLALE 155
            +D  N  A +N+ I L   +R   A++
Sbjct: 121 NIDSENSEAWKNKGITLNNMQRYSEAID 148



 Score = 38.9 bits (89), Expect = 2e-07
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 69  LFERGNYYDSVGLRDLARLDFTQSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDSTLE 128
           L+ +GNY DS+   +LA L+       NP   +++   G    + G +  + E FD  L 
Sbjct: 35  LYNQGNYVDSISEYNLALLE-------NPKSAEIWVNKGNSLLKLGIYGESTECFDKALL 87

Query: 129 LDPSNEYAVRNRAIALYYGERPQLALEEITKHYQQDPQD 167
           +DP N  A       L      Q ALE   K    D ++
Sbjct: 88  IDPENSEAFNGLGTVLSKTGNYQKALEMYDKSLNIDSEN 126



 Score = 37.4 bits (85), Expect = 5e-07
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 75  YYDSVGLRDLARLDFT-----QSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDSTLEL 129
           YY +   RD    ++      ++L INP+  D+    G+   +   + AA  +FD  ++L
Sbjct: 233 YYKADAYRDTENFEYALKYYDEALEINPSNSDILISKGICLDKMKNYSAAISNFDLAIQL 292

Query: 130 DPSN 133
           DP N
Sbjct: 293 DPKN 296



 Score = 32.0 bits (71), Expect = 2e-05
 Identities = 16/72 (22%), Positives = 34/72 (47%)

Query: 68  MLFERGNYYDSVGLRDLARLDFTQSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDSTL 127
           +L  +G   D +     A  +F  ++ ++P    ++ L G  Y    +++++   +   L
Sbjct: 265 ILISKGICLDKMKNYSAAISNFDLAIQLDPKNVQIWILKGNSYVGLKDYESSISCYKKAL 324

Query: 128 ELDPSNEYAVRN 139
           E++P NE A  N
Sbjct: 325 EIEPKNENAKEN 336



 Score = 31.6 bits (70), Expect = 3e-05
 Identities = 24/99 (24%), Positives = 42/99 (42%)

Query: 69  LFERGNYYDSVGLRDLARLDFTQSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDSTLE 128
           L  +GN Y  +   + A   F  + +INP            Y +   F+ A + +D  LE
Sbjct: 198 LLGKGNSYLKLQNYESAIECFNTAETINPKSEYPPYYKADAYRDTENFEYALKYYDEALE 257

Query: 129 LDPSNEYAVRNRAIALYYGERPQLALEEITKHYQQDPQD 167
           ++PSN   + ++ I L   +    A+       Q DP++
Sbjct: 258 INPSNSDILISKGICLDKMKNYSAAISNFDLAIQLDPKN 296



 Score = 29.6 bits (65), Expect = 1e-04
 Identities = 15/49 (30%), Positives = 27/49 (55%)

Query: 89  FTQSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDSTLELDPSNEYAV 137
           F +S+SIN    DV+   G    + GE++ + +S++  L +D   E A+
Sbjct: 150 FDKSISINAKNSDVWYNKGETQFKLGEYEKSIDSYNKALLIDEKMETAL 198