Pairwise Alignments

Query, 303 a.a., lipoprotein NlpI from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis JJ

 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 7/148 (4%)

Query: 8   IAVIGLVLLSGCATQNESATQWLYPPMAVPLQASIQQEVQIARLSQLLQRTDLEPEIRAK 67
           + VI ++L++GC    +S +   Y    + L         I+  +  L    LE    A+
Sbjct: 8   LTVILVLLMAGCIGDQKSKS---YNDKGLELYNQGNYVDSISEYNLAL----LENPKSAE 60

Query: 68  MLFERGNYYDSVGLRDLARLDFTQSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDSTL 127
           +   +GN    +G+   +   F ++L I+    + FN LG   ++ G +  A E +D +L
Sbjct: 61  IWVNKGNSLLKLGIYGESTECFNKALLIDSENSEAFNGLGTVLSKTGNYQKALEMYDKSL 120

Query: 128 ELDPSNEYAVRNRAIALYYGERPQLALE 155
            +D  N  A  N+ I L   +R   A+E
Sbjct: 121 NIDSENSEAWNNKGITLTNMQRYSEAIE 148



 Score = 37.4 bits (85), Expect = 5e-07
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 75  YYDSVGLRDLARLD-----FTQSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDSTLEL 129
           YY +   RD    +     + ++L INP+  DV    G+ + +   + +A  +FD  ++L
Sbjct: 233 YYKADAYRDTENFEDALKYYDETLEINPSNADVLINKGICFDKMKNYSSAISNFDLAIQL 292

Query: 130 DPSN 133
           DP N
Sbjct: 293 DPKN 296



 Score = 35.4 bits (80), Expect = 2e-06
 Identities = 19/74 (25%), Positives = 35/74 (47%)

Query: 66  AKMLFERGNYYDSVGLRDLARLDFTQSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDS 125
           A +L  +G  +D +     A  +F  ++ ++P    ++ L G  Y    +++ +   +  
Sbjct: 263 ADVLINKGICFDKMKNYSSAISNFDLAIQLDPKNVQIWILKGNSYVGLKDYEFSISCYKK 322

Query: 126 TLELDPSNEYAVRN 139
            LELDP NE A  N
Sbjct: 323 ALELDPENENAKEN 336



 Score = 33.5 bits (75), Expect = 7e-06
 Identities = 25/99 (25%), Positives = 42/99 (42%)

Query: 69  LFERGNYYDSVGLRDLARLDFTQSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDSTLE 128
           L  +GN Y  +   + A   F  + +INP            Y +   F+ A + +D TLE
Sbjct: 198 LLGKGNSYLKLQNYESAIECFNTAETINPKSEYPPYYKADAYRDTENFEDALKYYDETLE 257

Query: 129 LDPSNEYAVRNRAIALYYGERPQLALEEITKHYQQDPQD 167
           ++PSN   + N+ I     +    A+       Q DP++
Sbjct: 258 INPSNADVLINKGICFDKMKNYSSAISNFDLAIQLDPKN 296



 Score = 27.3 bits (59), Expect = 5e-04
 Identities = 14/49 (28%), Positives = 26/49 (53%)

Query: 89  FTQSLSINPAQPDVFNLLGVYYTEAGEFDAAYESFDSTLELDPSNEYAV 137
           F +S+SIN    DV+   G    + G++  + +S++  L +D   E A+
Sbjct: 150 FDRSISINAKNSDVWYNKGESQFKLGKYQESIDSYNKALLIDEKMETAL 198