Pairwise Alignments

Query, 709 a.a., polyribonucleotide nucleotidyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., SSU ribosomal protein S1p from Xanthomonas campestris pv. campestris strain 8004

 Score = 58.9 bits (141), Expect = 6e-13
 Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 614 QEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEV 673
           +++  +++ G I  G V  L D+GAFV  L G DGL+HI+ +A KRV   S+ +  G E+
Sbjct: 184 EQLMDKLQEGAILKGVVKNLTDYGAFVD-LGGIDGLLHITDMAWKRVRHPSEVVNVGDEL 242

Query: 674 QVKVLEIDRQ-GRVRLSMKEAVE 695
            V+VL+ DR+  RV L +K+  E
Sbjct: 243 DVRVLKFDRERNRVSLGLKQLGE 265



 Score = 52.8 bits (125), Expect = 5e-11
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 628 GKVARLADFGAFVTILPGKDGLVHISQI--ADKRVEKVSDYLTEGQEVQVKVLEIDRQ-G 684
           GKV+ + D+GAFV I PG +GLVH+S++   +K V   S  +  G EV+V VL++D +  
Sbjct: 283 GKVSNVTDYGAFVEIEPGVEGLVHVSEMDWTNKNVNP-SKVVQVGDEVEVMVLDVDEERR 341

Query: 685 RVRLSMKE 692
           R+ L MK+
Sbjct: 342 RISLGMKQ 349



 Score = 38.5 bits (88), Expect = 9e-07
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 628 GKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQVKVLEIDRQGR-V 686
           G V  +   GA + +  G +G V    IA++RV+  + +L  G +++ K + +DR+GR +
Sbjct: 457 GVVREVDAKGATIDLADGIEGYVAARDIANERVDDATQHLKVGDKIEAKFVGMDRKGRTL 516

Query: 687 RLSMK 691
           +LS+K
Sbjct: 517 QLSIK 521



 Score = 37.7 bits (86), Expect = 2e-06
 Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 2/68 (2%)

Query: 627 TGKVARLADFGAFVTILPGKDGLVHISQIA-DKRVEKVSDYLTEGQEVQVKVLEID-RQG 684
           +G++  + DFG F+ +  G DGLVH+S I+ +   E V     +G  ++  VL +D  + 
Sbjct: 369 SGQIKSITDFGIFIGLDGGIDGLVHLSDISWNTTGEDVVRNYKKGDTLEAVVLAVDPERE 428

Query: 685 RVRLSMKE 692
           R+ L +K+
Sbjct: 429 RISLGVKQ 436



 Score = 32.0 bits (71), Expect = 8e-05
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 14/101 (13%)

Query: 604 DQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
           D+ +EA+ + + IT  +  G +  G    + D  AF   LPG         + D R  + 
Sbjct: 97  DELEEALEKNETITGRIS-GKVKGGFTVDIKDVRAF---LPGS--------LVDVRPVRD 144

Query: 664 SDYLTEGQEVQVKVLEIDR-QGRVRLSMKEAVETSDAAAAE 703
             YL EG+E++ K++++DR +  V +S +  VE+  +   E
Sbjct: 145 PAYL-EGKELEFKLIKLDRKRNNVVVSRRAVVESEHSEERE 184