Pairwise Alignments

Query, 709 a.a., polyribonucleotide nucleotidyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

 Score = 64.7 bits (156), Expect = 2e-14
 Identities = 79/319 (24%), Positives = 133/319 (41%), Gaps = 34/319 (10%)

Query: 383 FPPYCVGETGFVGSPKRREIGHGRLAKRGIAAVMPSPEEFPYTVRVVSEITESNGSSSMA 442
           FP Y VG    +   +R +     L K    ++     +     +   +++ES G+   +
Sbjct: 420 FPEYDVGIRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDMNQK---KLSESLGAVVES 476

Query: 443 SVCGSSLALMDAGVPIKASVAGIAMGLVK-------EENDFVVLSDILGDEDHLGDMDFK 495
           SV    + L  A V +   V+GI +G+ K       E   F    ++L     LG   F+
Sbjct: 477 SVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELL-KVSKLGKKAFE 535

Query: 496 VAGTATGVTALQMDIKIEGITKEIMQIALNQAKGARLHILSVMDQAISAARSDISEFAPR 555
                  +   +      G+  E  +IA N      + I  + ++ I      ISE    
Sbjct: 536 QCAGFLRIPEGKNLFDNTGVHPESYKIAENLLNELNISIKDIKEKKIDK----ISE---- 587

Query: 556 IHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAATDGDQAKEAIRRIQE 615
               K+ +EK+ + +  G   +  + +E      +E  G         D  K  +R    
Sbjct: 588 ----KVDIEKLAEKLDCGIPTLEDIIKE------LEKPGR----DPREDLPKPVLRSDVL 633

Query: 616 ITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQV 675
              +++ G+I  G V  + DFGAF+ I    DGL HIS+IAD+ ++   D ++ G  V V
Sbjct: 634 ELEDLKEGMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKHPLDVISVGDIVDV 693

Query: 676 KVLEID-RQGRVRLSMKEA 693
            V++ID  + RV LS+K A
Sbjct: 694 MVMDIDFDKKRVSLSIKRA 712