Pairwise Alignments

Query, 709 a.a., polyribonucleotide nucleotidyltransferase from Vibrio cholerae E7946 ATCC 55056

Subject, 558 a.a., ribosomal protein S1 (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 58.5 bits (140), Expect = 8e-13
 Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 2/85 (2%)

Query: 625 IYTGKVARLADFGAFVTILPGKDGLVHISQIA-DKRVEKVSDYLTEGQEVQVKVLEIDR- 682
           ++TG+V  + D+GAFV + PG +GLVH+S+++  K+       ++  QEV+V VLEID  
Sbjct: 284 VHTGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVEVMVLEIDTV 343

Query: 683 QGRVRLSMKEAVETSDAAAAEVAPQ 707
           + RV L +K+ +       AE  P+
Sbjct: 344 KRRVSLGLKQTMRNPWEVFAETHPE 368



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 2/79 (2%)

Query: 615 EITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKVSDYLTEGQEVQ 674
           E+  ++  G    G V  + ++GAFV  L G DGL+H++ +A +RV   S+ L  G+ V+
Sbjct: 189 EVIGKLNEGDAVDGVVENITEYGAFVD-LGGVDGLLHVTDMAWRRVNHPSEILAIGETVK 247

Query: 675 VKVLEIDRQ-GRVRLSMKE 692
           V+V++I+++  R+ L MK+
Sbjct: 248 VQVIKINKETHRISLGMKQ 266



 Score = 45.1 bits (105), Expect = 1e-08
 Identities = 64/274 (23%), Positives = 124/274 (45%), Gaps = 30/274 (10%)

Query: 440 SMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVLSDILGDED--HLGDMDFKVA 497
           S  ++   S A   A V  K +      G+V+   ++    D+ G +   H+ DM ++  
Sbjct: 174 SRRAILEESRAEQRAEVIGKLNEGDAVDGVVENITEYGAFVDLGGVDGLLHVTDMAWRRV 233

Query: 498 GTATGVTALQMDIKIE--GITKEIMQIALN--QAKGARLHILS---VMDQAISAARSDIS 550
              + + A+   +K++   I KE  +I+L   Q +    +++     +D   +   ++I+
Sbjct: 234 NHPSEILAIGETVKVQVIKINKETHRISLGMKQLQDDPWNLVEGKYPLDSVHTGRVTNIT 293

Query: 551 EFAP----------RIHTMKISVEKIKDVIGKGGAVIRQLTEETGTTIEIEDDGTIKIAA 600
           ++             +H  ++S  K K+V    G ++    E     +EI+   T+K   
Sbjct: 294 DYGAFVELEPGVEGLVHVSEMSWTK-KNV--HPGKIVSTSQEVEVMVLEID---TVKRRV 347

Query: 601 TDGDQAKEAIRRIQEITAEVEV-GVIYTGKVARLADFGAFVTILPGKDGLVHISQIA-DK 658
           + G   K+ +R   E+ AE    G    G+V  + +FG F+ +    DG+VH+S ++ D+
Sbjct: 348 SLG--LKQTMRNPWEVFAETHPEGTEVEGEVKNITEFGLFIGLENDIDGMVHLSDLSWDQ 405

Query: 659 RVEKVSDYLTEGQEVQVKVLEID-RQGRVRLSMK 691
           R E+      +G  VQ  V E+D  + R+ LS+K
Sbjct: 406 RGEEAIQNYRKGDVVQAVVSEVDVEKERISLSVK 439



 Score = 25.8 bits (55), Expect = 0.006
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 604 DQAKEAIRRIQEITAEVEVGVIYTGKVARLADFGAFVTILPGKDGLVHISQIADKRVEKV 663
           ++A + + +  E  A VE  +    K     D G  V  LPG       SQ+  + V   
Sbjct: 97  EEAWDRLEKAYEDDARVEGAIFGRVKGGFTVDLGGAVAFLPG-------SQVDVRPVRDA 149

Query: 664 SDYLTEGQEVQVKVLEID-RQGRVRLSMKEAVETSDA 699
              +  G +   ++L++D R+G + +S +  +E S A
Sbjct: 150 GPLM--GLKQPFQILKMDRRRGNIVVSRRAILEESRA 184