Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., tRNA pseudouridine 55 synthase from Pseudomonas stutzeri RCH2

 Score =  287 bits (734), Expect = 3e-82
 Identities = 149/305 (48%), Positives = 205/305 (67%), Gaps = 7/305 (2%)

Query: 4   RRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATK 63
           +R  R ++G+ILLDKP G +SN ALQKV+ L  AEKAGHTG+LDPLATG+LP+C GEATK
Sbjct: 5   KRVRRNVNGIILLDKPRGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATK 64

Query: 64  FSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVPS 123
           FSQ+LLD+DK Y  + +LG  T T+D++G+V++ +PV V  + L A + +FRG+  QVP 
Sbjct: 65  FSQYLLDADKAYETVMQLGVTTTTADAEGEVLERKPVAVTVEQLEALLPQFRGDILQVPP 124

Query: 124 MFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIRTIV 183
           M+SALK  G+PLY+ AR G  V RE R + +  +EL   EGD+  + V CSKGTYIRT+V
Sbjct: 125 MYSALKRDGQPLYKLARAGEVVEREPRSVNIARLELLSLEGDKARLAVSCSKGTYIRTLV 184

Query: 184 DDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLLLPM 243
           +DLG +LGCGAHV  LRR     +   + VTLE L    EQ H   +  A+ LD LL P+
Sbjct: 185 EDLGHLLGCGAHVAELRRTQAGPFDLSQTVTLETL----EQLH--SEGGAEALDALLQPV 238

Query: 244 DTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNGKVA 303
           D+ +E  P + +         HGQ V+   AP  GMVR+     + F+G+GE+ ++G++A
Sbjct: 239 DSGLEHWPLLQLSEHSAYYWLHGQPVRAPEAPKYGMVRVQDNNGR-FIGIGEVSEDGRIA 297

Query: 304 PKRLV 308
           P+RL+
Sbjct: 298 PRRLI 302