Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., tRNA pseudouridine synthase B (EC 4.2.1.70) from Xanthomonas campestris pv. campestris strain 8004

 Score =  216 bits (551), Expect = 4e-61
 Identities = 126/301 (41%), Positives = 175/301 (58%), Gaps = 11/301 (3%)

Query: 8   RVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATKFSQF 67
           R +HG++LLDKP G+SSN+ALQ  +RL  AEK GHTG+LDPLATG+LP+C GEATK +  
Sbjct: 8   RPLHGILLLDKPAGLSSNNALQAARRLLRAEKGGHTGSLDPLATGLLPLCFGEATKIAGL 67

Query: 68  LLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPV-HVDYDTLLACIAKFRGETDQVPSMFS 126
           LL S K Y     LG  TDT D+DGQ ++ R V  +    L A +A F G   Q   ++S
Sbjct: 68  LLGSAKAYDAEIVLGVTTDTDDADGQPLRERSVPALSEAALQAALAPFIGRIQQQAPIYS 127

Query: 127 ALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIRTIVDDL 186
           ALK  G PLY  AR+G  +    R++ V+ I L  +    + + V C  GTYIR++  DL
Sbjct: 128 ALKQGGEPLYAKARRGEVIEAPVREVEVHAITLTSYASPRLRLRVTCGSGTYIRSLARDL 187

Query: 187 GEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLLLPMDTA 246
           GE+LGCGAH+  LRRV V  +    M+TLE L ALVE         AD    LLLP+   
Sbjct: 188 GEVLGCGAHIAALRRVWVEPFRTPEMITLEALTALVESG-------ADAAQ-LLLPVAAG 239

Query: 247 VEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNGKVAPKR 306
           +    ++ +   L    + GQ ++    P +G V +   +     G+G +D +G+++P+R
Sbjct: 240 LSDFAQITLDATLAARFRMGQRLRDPAFP-EGQVAVFDADGSP-AGLGLVDADGRLSPQR 297

Query: 307 L 307
           L
Sbjct: 298 L 298