Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., tRNA pseudouridine synthase B from Pseudomonas syringae pv. syringae B728a

 Score =  287 bits (735), Expect = 2e-82
 Identities = 151/305 (49%), Positives = 203/305 (66%), Gaps = 7/305 (2%)

Query: 4   RRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATK 63
           +R  R + G+ILLDKP G +SN ALQKV+ L  AEKAGHTG+LDPLATG+LP+C GEATK
Sbjct: 5   KRIRRNVSGIILLDKPLGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATK 64

Query: 64  FSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVPS 123
           FSQ+LLDSDK Y  +A+LG+ T T+DS+G+V+ TRPV V  D + A +  FRG+  Q+P 
Sbjct: 65  FSQYLLDSDKSYETLAQLGKTTTTADSEGEVLLTRPVTVGRDDIEAALPHFRGQISQIPP 124

Query: 124 MFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIRTIV 183
           M+SALK  G+PLY+ AR G  V RE R +T+  +EL   EGD   + V CSKGTYIRT+V
Sbjct: 125 MYSALKRDGQPLYKLARAGEVVEREPRSVTIARLELLACEGDTARLSVDCSKGTYIRTLV 184

Query: 184 DDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLLLPM 243
           +D+GE LGCGA+V  LRR     +   + VTLE+L    EQ H D     + +D  L+P 
Sbjct: 185 EDIGEKLGCGAYVAELRRTQAGPFTLAQTVTLEEL----EQVHAD--GGNEAVDRFLMPS 238

Query: 244 DTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNGKVA 303
           D+ +   P +           HGQ V+   AP  GMVR+   E + F+G+GE+ ++G++A
Sbjct: 239 DSGLLDWPLLKFSEHSSFYWLHGQPVRAPDAPKFGMVRVQDHEGR-FIGIGEVAEDGRIA 297

Query: 304 PKRLV 308
           P+RL+
Sbjct: 298 PRRLI 302