Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., tRNA pseudouridine synthase B from Sinorhizobium meliloti 1021

 Score =  184 bits (468), Expect = 2e-51
 Identities = 112/307 (36%), Positives = 164/307 (53%), Gaps = 6/307 (1%)

Query: 3   RRRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEAT 62
           R+ KGR I G ++LDKP    S +A+ K+K L+ A+KAGH G LDPLA+GMLPI LG+AT
Sbjct: 5   RKPKGRPISGWLILDKPLDFGSTEAVSKIKWLFKAQKAGHAGTLDPLASGMLPIALGDAT 64

Query: 63  KFSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVP 122
           K   +++D  K Y      GE   T D +G+ V++     + + + A + K+ G   QVP
Sbjct: 65  KTVPYVMDGRKIYEFTVAWGEERSTDDLEGEAVRSSAARPEEEAIRALLPKYTGVIAQVP 124

Query: 123 SMFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIRTI 182
             FSA+K  G   Y+ AR G  V   AR++ V+ + L     +    E+ C KGTY+R++
Sbjct: 125 PQFSAIKIGGERAYDLARDGETVEIPAREVEVFRLSLIGSAPNLAHFEIECGKGTYVRSL 184

Query: 183 VDDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLLLP 242
             D+G  LGC  H+  LRR  VA +  E MV L  L AL  +A  D+      LD  L+ 
Sbjct: 185 ARDMGRDLGCFGHIASLRRTFVAPFGEEDMVPLADLVAL--EAIEDDAERLAALDAYLID 242

Query: 243 MDTAVEALPEVNVIPELMTLIQHGQAVQVSG--APSDGMVRITGGEQKLFLGVGEIDDNG 300
              A+  LP + V  +    ++ G  + + G  AP          + KL + +GEI + G
Sbjct: 243 TGEALSDLPHIAVNDDQAHRLRMGNPIILRGRDAPLPTPEAYATAQGKL-VAIGEIAE-G 300

Query: 301 KVAPKRL 307
           +  PKR+
Sbjct: 301 EFRPKRV 307