Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  415 bits (1067), Expect = e-121
 Identities = 205/310 (66%), Positives = 249/310 (80%)

Query: 1   MARRRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGE 60
           MARR KGR I G++LLDKPTG+SSN ALQ+VKR+Y A KAGHTGALDPLATGMLP+CLGE
Sbjct: 1   MARRTKGRNIDGIVLLDKPTGMSSNHALQRVKRIYNASKAGHTGALDPLATGMLPVCLGE 60

Query: 61  ATKFSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQ 120
           ATKFSQ LLD+DKRY V AKLG+RTDTSDSDG+VV  RP++   + L A +  FRG+T Q
Sbjct: 61  ATKFSQHLLDADKRYLVTAKLGQRTDTSDSDGEVVSERPLNFTQEALDAALDSFRGDTLQ 120

Query: 121 VPSMFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIR 180
           VPSMFSALKYQG+PLY+YAR+G EVPREAR ITV+E+   + EGDE+ +++HCSKGTYIR
Sbjct: 121 VPSMFSALKYQGQPLYKYAREGKEVPREARPITVFELNFIKLEGDELTLDIHCSKGTYIR 180

Query: 181 TIVDDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLL 240
           TI+DDLGE LGCGAHV MLRR  VA YPYERMVT+E L AL+EQA ++      +LDPLL
Sbjct: 181 TIIDDLGEKLGCGAHVIMLRRTAVAGYPYERMVTIEALEALLEQAEKEGVEPKTLLDPLL 240

Query: 241 LPMDTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNG 300
           LPMDTAV   PEVN+   +   + +G  V+V+G  SD ++RIT GE + F+GVG I+D+G
Sbjct: 241 LPMDTAVANFPEVNIPDAVAPYLMNGNPVRVAGVSSDSLLRITLGEARRFVGVGAINDDG 300

Query: 301 KVAPKRLVVY 310
            +APKRLVV+
Sbjct: 301 LLAPKRLVVF 310