Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., tRNA pseudouridine(55) synthase TruB from Rhodopseudomonas palustris CGA009

 Score =  211 bits (536), Expect = 3e-59
 Identities = 123/309 (39%), Positives = 180/309 (58%), Gaps = 13/309 (4%)

Query: 4   RRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATK 63
           RR  R +HG ++LDKP G++S  A+  +KRL+ A++AGH G LDPLA+G LPI +GEATK
Sbjct: 49  RRDKRDVHGWVVLDKPIGMTSTQAVAVLKRLFSAKRAGHAGTLDPLASGGLPIAMGEATK 108

Query: 64  FSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVPS 123
              F++D  KRYR     GE  DT D++G+ V T P     + + A + +F G  +QVP 
Sbjct: 109 TVPFVMDGRKRYRFTVAWGEERDTDDTEGRAVATSPDRPTAEAIRALLPRFTGVIEQVPP 168

Query: 124 MFSALKYQGRPLYEYARQGIEVPREARKITVYEIEL--HRFEGDEVEMEVHCSKGTYIRT 181
            +SA+K QG   Y+ AR G  VP   R + ++E+ L  H  +G  V  E  C KGTY+R 
Sbjct: 169 QYSAVKIQGERAYDLARDGEVVPLVPRPVEIHELTLVEHGDDGRSV-FEAECGKGTYVRA 227

Query: 182 IVDDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLLL 241
           +  D+G +LGC  H+  LRR  V  +    M+ LE+L AL ++A   E ++AD     LL
Sbjct: 228 LARDMGRLLGCYGHICALRRTVVGPFDESDMIPLEELQALCDRAASGEGSLADA----LL 283

Query: 242 PMDTAVEALPEVNVIPELMTLIQHGQAVQVSG--AP-SDGMVRITGGEQKLFLGVGEIDD 298
           P++TA++ +P + V       +  GQAV + G  AP   G V +T   +   L + E+  
Sbjct: 284 PVETALDDIPALAVTRADAARLHRGQAVLLRGRDAPHCSGTVYVTVAGR--LLALAEV-G 340

Query: 299 NGKVAPKRL 307
           NG++ PKR+
Sbjct: 341 NGELIPKRV 349