Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella loihica PV-4

 Score =  416 bits (1069), Expect = e-121
 Identities = 205/309 (66%), Positives = 250/309 (80%)

Query: 1   MARRRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGE 60
           MAR+ +GR++ G++LLDK TG+SSN ALQ+VKR+Y A KAGHTGALDPLATGMLPICLGE
Sbjct: 1   MARKPRGRLVDGIVLLDKDTGMSSNFALQRVKRIYNAAKAGHTGALDPLATGMLPICLGE 60

Query: 61  ATKFSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQ 120
           ATKFSQ LLD+DKRY V AKLG RTDTSDSDG+VVQTRP++     L   +  FRGET Q
Sbjct: 61  ATKFSQHLLDADKRYLVTAKLGVRTDTSDSDGEVVQTRPINFTEQQLEEALEHFRGETMQ 120

Query: 121 VPSMFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIR 180
           VPSM+SALKYQG+PLY+YAR+G EVPREAR I V+E+   + EGDE+ +++HCSKGTYIR
Sbjct: 121 VPSMYSALKYQGQPLYKYAREGKEVPREARPIKVFELNFIKLEGDELTLDIHCSKGTYIR 180

Query: 181 TIVDDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLL 240
           TI DDLGEMLGCGAHV MLRR GVA YPY++MVTLEQL AL+ +A  +E+   ++LDPLL
Sbjct: 181 TITDDLGEMLGCGAHVIMLRRTGVAGYPYDKMVTLEQLEALLAKAQEEERPPKELLDPLL 240

Query: 241 LPMDTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNG 300
           LPMDTAV  L E+NV  EL   + +G  VQV+  P D +VRIT GE K F+G+G+++D+G
Sbjct: 241 LPMDTAVSGLKEINVSDELAHYLMNGNPVQVANLPIDELVRITLGEAKQFVGIGQMNDDG 300

Query: 301 KVAPKRLVV 309
            +APKRLVV
Sbjct: 301 LLAPKRLVV 309