Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., tRNA pseudouridine 55 synthase from Dechlorosoma suillum PS

 Score =  264 bits (675), Expect = 2e-75
 Identities = 146/305 (47%), Positives = 193/305 (63%), Gaps = 15/305 (4%)

Query: 4   RRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATK 63
           RR  + + GV+LLDKP  +SSNDALQK +R + A KAGHTG LDPLATG+LPIC GEATK
Sbjct: 5   RRTWKQVDGVLLLDKPLHLSSNDALQKARRFFSAAKAGHTGTLDPLATGLLPICFGEATK 64

Query: 64  FSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVPS 123
           FS  LLD+DK Y    +LG+ T T D++G+++QTRPV V  + L A + +F G   QVP 
Sbjct: 65  FSADLLDADKAYVADVRLGQTTATGDAEGEILQTRPVQVSAEQLAAVLPRFTGVIAQVPP 124

Query: 124 MFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIRTIV 183
           M+SALK  G+PLYE ARQG+EV REAR++T+  +    F+G    + V CSKGTYIRT+ 
Sbjct: 125 MYSALKRDGKPLYELARQGLEVEREAREVTILSLAASDFDGVNFRLHVDCSKGTYIRTLA 184

Query: 184 DDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLLLPM 243
           +D+GE LGCGAH+T LRR  V     +R V+L +L    E+A R            LLP+
Sbjct: 185 EDIGEALGCGAHLTGLRRTRVGPLELDRAVSLAELEN-TEEADRGR---------YLLPV 234

Query: 244 DTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNGKVA 303
           D  + +LPEV +  E +    HG  V        G  R+ G  + +  GVGE+ + GK+ 
Sbjct: 235 DALLRSLPEVLLEAESLQRFAHGNPVATE--LQSGKARVYG--EGVLQGVGEVRE-GKLW 289

Query: 304 PKRLV 308
           P RL+
Sbjct: 290 PYRLL 294