Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., tRNA pseudouridine(55) synthase TruB from Dyella japonica UNC79MFTsu3.2

 Score =  224 bits (571), Expect = 2e-63
 Identities = 123/272 (45%), Positives = 165/272 (60%), Gaps = 8/272 (2%)

Query: 3   RRRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEAT 62
           RR + R +HG++LLDKP G+SSN ALQK + L  AEK GHTGALDPLATG+LP+C GEAT
Sbjct: 2   RRSRFRDLHGLLLLDKPLGLSSNQALQKARHLLRAEKGGHTGALDPLATGLLPLCFGEAT 61

Query: 63  KFSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPV-HVDYDTLLACIAKFRGETDQV 121
           K +  LL S K YR   +LG  T T+D +G+VV  RPV  +D   L A +A  RG   QV
Sbjct: 62  KIAGSLLGSRKAYRAELRLGATTTTADLEGEVVLERPVLPLDEAVLEAALAGLRGRIVQV 121

Query: 122 PSMFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIRT 181
           P ++SALK  G PLY  AR+G +V    R++ V+ +EL     D + +EV C  GTYIR+
Sbjct: 122 PPVYSALKQGGEPLYVKARRGEDVQAPPREVEVFRLELLSRTADTLRLEVECGSGTYIRS 181

Query: 182 IVDDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLLL 241
           +  DLGE LGCGAH+T L R+ V  +    M+TL +L A   Q           +D L+L
Sbjct: 182 LAVDLGEALGCGAHLTALHRLWVEPFRIPAMITLAELEAAAAQGEA-------AMDALVL 234

Query: 242 PMDTAVEALPEVNVIPELMTLIQHGQAVQVSG 273
           P+   +   P + +  E    +  GQ +Q++G
Sbjct: 235 PVAAGLAGWPALALDEEQSVAVTKGQRIQLAG 266