Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., tRNA pseudouridine synthase B (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  184 bits (468), Expect = 2e-51
 Identities = 113/287 (39%), Positives = 153/287 (53%), Gaps = 19/287 (6%)

Query: 1   MARRRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGE 60
           M RR+KGR + G I++DKP G+SSN  + KV+  + A+KAGH G LDP ATG+L I LGE
Sbjct: 1   MGRRKKGRAVSGWIVIDKPAGLSSNAVVGKVRWAFDAQKAGHAGTLDPEATGVLAIALGE 60

Query: 61  ATKFSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQ 120
           ATK   F+ D+ K Y    +LG+ T+T D +G+V +T       D + A +  F G+  Q
Sbjct: 61  ATKTVPFVTDALKAYEFTVRLGQATNTDDGEGEVTETSDARPSDDEIRAALPPFEGDILQ 120

Query: 121 VPSMFSALKYQGRPLYEYARQGIEVPREARKITVYEIE-LHRFEGDEVEMEVHCSKGTYI 179
           VP  FSA+K  G   Y  AR G E+   AR + V  +  + R + D V +E+ C KG Y+
Sbjct: 121 VPPQFSAVKIDGERAYARARAGQEMEIAARPLYVDSLTFIARPDPDHVTLEMVCGKGGYV 180

Query: 180 RTIVDDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPL 239
           R+I  DLG  LGC  HV  LRR     +       LE L  L +            LD  
Sbjct: 181 RSIARDLGRALGCFGHVKSLRRTWSGPFELSDATPLETLEDLAKD---------PALDAH 231

Query: 240 LLPMDTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGE 286
           L+P++T +  LPE+   PE       G A   +G P  GMVR +  E
Sbjct: 232 LMPLETGLADLPELPCTPE-------GAARMRNGNP--GMVRASDAE 269