Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., tRNA pseudouridine synthase B from Caulobacter crescentus NA1000

 Score =  192 bits (488), Expect = 9e-54
 Identities = 104/270 (38%), Positives = 153/270 (56%), Gaps = 10/270 (3%)

Query: 1   MARRRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGE 60
           MARR+KG  + G + LDKP  ++S  A+ +V+R + A+K GH G LDPLATG+LPI LGE
Sbjct: 1   MARRKKGDAVSGWLCLDKPYDLTSTTAVSRVRRAFNAQKGGHAGTLDPLATGILPIALGE 60

Query: 61  ATKFSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQ 120
           ATK   FL+D+DK YR     G  T T D +G+   T  V    + + A +  F GE DQ
Sbjct: 61  ATKTVPFLMDADKAYRFTIAWGRDTTTLDREGETTGTSDVRPTREQVEAALPAFIGEVDQ 120

Query: 121 VPSMFSALKYQGRPLYEYARQGIEVPREARKITVYEIE-LHRFEGDEVEMEVHCSKGTYI 179
           +P  FSA+K  G   Y+ AR G+E     RK+++++++ + + + D V + + C KGTY+
Sbjct: 121 IPPNFSAIKVDGERAYDLARDGVEFELPTRKVSIFDLKVVDQPDADHVTLTMECGKGTYV 180

Query: 180 RTIVDDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPL 239
           R +V DL + LG   HV  LRR  V  +     + LE L  L  +A          L   
Sbjct: 181 RAVVRDLAKALGTCGHVADLRRTRVGGFSEASAIALETLENLSYEAR---------LSEA 231

Query: 240 LLPMDTAVEALPEVNVIPELMTLIQHGQAV 269
           LLP++TA++ +P + V  E    +  G+A+
Sbjct: 232 LLPVETALDDIPALAVTDEDAFRLAQGRAI 261