Pairwise Alignments

Query, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., tRNA pseudouridine synthase B (RefSeq) from Shewanella sp. ANA-3

 Score =  412 bits (1060), Expect = e-120
 Identities = 205/309 (66%), Positives = 249/309 (80%)

Query: 1   MARRRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGE 60
           MARR KGR I G++LLDK TG+SSN ALQ+VKR + A KAGHTGALDPLATGMLP+CLGE
Sbjct: 1   MARRSKGRFIDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGE 60

Query: 61  ATKFSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQ 120
           ATKFSQ LLDSDKRY V AKLG+RTDTSDSDG+VVQTRP+      L++ +  FRG+T Q
Sbjct: 61  ATKFSQHLLDSDKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTEAQLMSALEHFRGDTQQ 120

Query: 121 VPSMFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIR 180
           VPSM+SALKYQG+PLY+YAR+GIEVPREAR ITV+E+     EGDE+ +++HCSKGTYIR
Sbjct: 121 VPSMYSALKYQGQPLYKYAREGIEVPREARPITVFELNFIGLEGDELTLDIHCSKGTYIR 180

Query: 181 TIVDDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLL 240
           TI+DDLGEMLGCGAHV MLRR  VA+YPY++MVTLEQL ALV +A  ++   + +LD LL
Sbjct: 181 TIIDDLGEMLGCGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDPSSLLDSLL 240

Query: 241 LPMDTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNG 300
           LPMDTAV   PEVNV       +  GQAV+VSG  +D +VRIT G ++ F+G+GE++ +G
Sbjct: 241 LPMDTAVADFPEVNVPDASAAYLMQGQAVRVSGLVADTLVRITLGTERRFVGIGEMNQDG 300

Query: 301 KVAPKRLVV 309
            +APKRLVV
Sbjct: 301 LLAPKRLVV 309