Pairwise Alignments

Query, 898 a.a., translation initiation factor IF-2 from Vibrio cholerae E7946 ATCC 55056

Subject, 598 a.a., translation initiation factor IF-2 from Methanococcus maripaludis JJ

 Score =  171 bits (432), Expect = 2e-46
 Identities = 159/552 (28%), Positives = 249/552 (45%), Gaps = 95/552 (17%)

Query: 398 RAPVVTIMGHVDHGKTSTLDYIRRTHVASGEAGGITQHIGAYHVETPN---------GM- 447
           R P+V+++GHVDHGKTS LD IRRT V   EAGGITQHIGA  +             G+ 
Sbjct: 4   RCPIVSVLGHVDHGKTSLLDKIRRTRVTQREAGGITQHIGASEIPINTIKKVSKDLLGLF 63

Query: 448 --------ITFLDTPGHAAFTAMRARGAQATDIVVLVVAADDGVMPQTVEAIQHAKAAGV 499
                   I  +DTPGH AFT++R RG    DI +LVV  ++G  PQT+EAI   K    
Sbjct: 64  KADLSIPGILVIDTPGHEAFTSLRKRGGALADIAILVVDINEGFKPQTIEAINILKQCKT 123

Query: 500 PLIVAVNKIDK----------------DTANPDNVKTELS---QYNVMP--EEWGGD-NM 537
           P +VA NK+D+                +     N  TE       NV+    E G D ++
Sbjct: 124 PFVVAANKVDRIPGWNSSEGPFILNFNEKNQHPNAMTEFEIRLYENVIKHLNELGFDADL 183

Query: 538 F------------VHISAKQGTNIDGLLEAIL-LQAEVLELKAV--KQGMASGVVIESRL 582
           F            V +SA  G  +  LL  I  L    LE K     +G A G V+E + 
Sbjct: 184 FSRVKDTTKTINVVPVSAMTGEGVPDLLVIISGLAQRFLEQKLALNVEGYAKGTVLELKE 243

Query: 583 DKGRGPVATVLVQSGTLRKGDIVLCGQEYG----RVRAM-----RDEVGNEVEEAGPSIP 633
           +KG G     ++  G  + GD ++ G   G    +++A+      DE+ +  ++  PS  
Sbjct: 244 EKGLGKTIDAIIYDGIAKTGDFLVVGNPDGVLVSKIKALLKPKELDEMRDPKDKFKPS-- 301

Query: 634 VEILGLSGVPAAGDEATVVRDERKAREVANYRAGKFREVKLARQQKSKLENMFSNMTAGD 693
            +I   +GV  +  +   V      R V         +V+ A+++  +    F+ +T  +
Sbjct: 302 KQISAATGVKISAPDLDSVIAGSPLRIVPK------NQVEAAKEEVLEEVEEFTILTDDE 355

Query: 694 VAELNIVLKADVQGSVEAIADSLTKLSTDEVKVNIVGSGVGGITETDAVLAAA------S 747
                I++KAD  GS+EA+A+ L K     V   I  + VG I++ D + A++       
Sbjct: 356 ----GIIIKADTMGSLEALANELRK-----VNAKIKKAEVGDISKKDVIEASSYASTNPL 406

Query: 748 NAIVVGFNVRADASARRMIEAENIDLRYYSIIYQLIDEVKQAMSGMLSPEFKQEIIGLAE 807
           N +++ FN +  A A+  IE  ++ L    IIY+L++E ++    M       EI  L +
Sbjct: 407 NGLIISFNTKVLADAKAEIEKSDVKLLEGKIIYKLVEEHEEWTKEMEELMKSDEINRLTK 466

Query: 808 VRDVFKSP------KLGAIAGCMVTEGVIKRNAPIRVLRDNVVIYEGELESLRRFKDDVA 861
              +   P      K  A+ G  V  G +K  +PI       + Y  E+   +  ++++ 
Sbjct: 467 PAMIKILPNCIFRQKEPAVCGVEVLYGTLKIGSPIMSEDGKKLGYVKEMRDNQ--QENIK 524

Query: 862 EVKNGYECGIGV 873
           E K G +  + +
Sbjct: 525 EAKVGMQVPVSI 536